Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1090 ATGGAAGGCCTGTGCAAACTAATCAACCTTGAAGAACTGGATCTTAGTCGTAATGGATTTAAGGGTAGTCTTCCTGCGTGCCTCAACAATTTGACATCCCTACGTTTGCTTGACCTATCCAAAAATGATTTACATGGGGCTATTCCTTCATCCATCTTCTCCAATTTGAAGTCACTTGAGTATATTTCTCTATCTTATAATCATTTCGAGGGCTCATTCTATTTTGGTTCACTCTTTAACCACTCCAGACTTGTGGTTTTCGACCTTTCTAGCAATAACAAGTATTTGAAGGTTGAGACTGAAAATCCGACATGGTCATTTCCTCTATTTCAATTGAAACTTCTCCTGTTATCCAACTACACCCTCAATTGGCCAAGTCGGGTTATACCCAGCTTTCTTTTTAGACAATATGATTTGAGAGTGGTCGACCTTCGCTACAACGATCTGACAAGAGATGTCCCGACCTGGTTATTAGACAATAATACGAAACTAGAATACATGAGCTTTGAAAGTAATAGCTTGACTGGTGTTCTTGATTTTCGCTCAAATTCAAAACATTTCCACATGTTTTTGCTTGATTTCTCCTCGAATTGCATTCATAGAGAGCTTCCACCTTTCATAGGCTCTATTTTTCCAAGGTTGGAGGTGTTAAACTTGTCTGGAAATGCATTACAAGGTAATATTCCTTCTTCAATGGGTGGCATCAAACGGTTGAAATCTTTATACTTGTCAAACAACAATTTCTTAGGATAA 753 0.3825 MEGLCKLINLEELDLSRNGFKGSLPACLNNLTSLRLLDLSKNDLHGAIPSSIFSNLKSLEYISLSYNHFEGSFYFGSLFNHSRLVVFDLSSNNKYLKVETENPTWSFPLFQLKLLLLSNYTLNWPSRVIPSFLFRQYDLRVVDLRYNDLTRDVPTWLLDNNTKLEYMSFESNSLTGVLDFRSNSKHFHMFLLDFSSNCIHRELPPFIGSIFPRLEVLNLSGNALQGNIPSSMGGIKRLKSLYLSNNNFLG* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1090 250 SUPERFAMILY L domain-like 4 248 - -
Vvi17g1090 250 Gene3D Ribonuclease Inhibitor 2 50 IPR032675 -
Vvi17g1090 250 PANTHER RECEPTOR-LIKE PROTEIN 14 3 250 - -
Vvi17g1090 250 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 2 98 - -
Vvi17g1090 250 Gene3D Ribonuclease Inhibitor 51 250 IPR032675 -
Vvi17g1090 250 PRINTS Leucine-rich repeat signature 10 23 - -
Vvi17g1090 250 PRINTS Leucine-rich repeat signature 31 44 - -
Vvi17g1090 250 SMART LRR_typ_2 7 30 IPR003591 -
Vvi17g1090 250 SMART LRR_typ_2 31 55 IPR003591 -
Vvi17g1090 250 SMART LRR_typ_2 211 235 IPR003591 -
Vvi17g1090 250 Pfam Leucine Rich Repeat 9 31 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1090 Vvi-Chr17 15026785 15029514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1090 13 93 Miscellaneous Gene Families AT1G74180 45.679 8.83e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1090 - - vvi:109124317 471.085