Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1611 ATGCTCCCCAACAATGTCGTTTCCTCAGTTGAAAAGTGTTCATTTCTGATTTCTAAGTGTGTCACGGCGAGGAGGGTGAAACTCACAAATGCCGTGCACGGTCACCTTATCAAAACCGCGCTTTTCTTCGACGCTTTCCTCGCCAACGGTCTTATTGACGCGTATTCAAAGTGCGGCTGCGAAGAAAGTTTACGAAAGACCTTCGACGATCTTCCCAACAAGACCACTCGTTCGTGGAACACACTAATATCGTTTTACTCGAAAATGGGCCTTTTCGACAAGGCCCATAATCTGTTCGATAAAATGCCTCAACGGAACGTCGTTAGTTATAACTCGCTAATCTCCGGTTTCACGCGATACGATCGTCACGAAGATTCGATTAAGCTCTTTCGAGTGATGCAAAACGGTCGTAACGTTTTAGTTTTAGACGAGTTTACAGTCGTTAGCGTAGTCGGAAGCTGCGCTTGTTTGGGCAATGCTAAATGGTTGCATCAGGTTCATGGGGTGGCAGTTATAGTTGGCATGGAGTGGAACCTGATTCTCAACAACGCGTTAATTGATGCTTATGGGAAATGTGGTGAACCCGACTTGTCGTGTTCTGTGTTTTGCTGGATGCCAGAGAGAAATGTTGTGTCTTGGACATCGATGGTTGTGGCTTACTCTAGAGCGTGTAGGTTGGATGATGCTTGTGAGGTATTTAAGGATATGCCGGTTAAGAACACGGTTTCTTGGACTGCTTTGATAACAGGTTTTGCGAGAAATGGGCGTTTTGGTGAAGCTTTTGATGTTTTTAAGGAAATGTTGGAAGAGGGTGTGAGGCCTAGTGCTCCAACTTTTGTGAGTATTATAGATGCTTGTGCAGAAGAGGCTCTTATAGGAAGAGGTAAGCAGGTGCATGGTAAAATTATTAGAGGTGGCATAAGTGGGAACTTGTTTAATGTGTATGTCTGCAATGCTTTGATTGACATGTATGGTAAGTGTGGAGATATGAAATCGGCTGAAAATTTGTTTCAGATGGCTCCTGTGAGAGATGTGATAACTTGGAATACGTTGATAACTGGTTTTGCACAAAATGGTCGTGGGGAGGATTCATTGGCTGTGTTTAGAAGGATGGTAGAAGCCAAAGTAGAACCCAATCATGTGACATTTCTTGGGGTGCTATCTGGTTGTAGCCATGCAGGTTTAGATAATGAAGGGCTAGAGTTGGTAGATTTGATGGAAAGAAAGTATGGAGTGAAGCCTAAAGCTGATCACTATGCTTTATTGATTGATTTGCTGGGAAGGAAAAACAGACTCAAGGAAGCCATGAGTTTGACTGAAAAGGTGCCTAATGAAATTATGAATCACATTGCAGTGTGGGGTGCAATATTGGGTGCTTGTAGAATTCATGGGAACTTGGACCTTGCCAGAAAGGCTGCAGAGGCACTGTTTGAATTGGAACCAAACAATACAGCTAGGTATGTTATGCTAGCAAACATCTATGCTGCGTGTGGTAGATGGGGTGATGCCAAAAGAATTAGGACGGTAATGAAGGAAAGGTGTTTGAAGAAAGAACCAGCTTTTAGTTGGATTGAGTTGAGAAATCTGAGACACGAATTTGTGGCCAAGGACAAGCTGCATCCACAGATTGGAGAGATATGTGAAGTGAACAATAAATTAGTTCTTCATTTGAAGGATGCTGGGTATCATCAGCCTTATATTGATTACCCTTTTCATCCAGATTATGATGATGATTTCTACTTTAATTAG 1749 0.4277 MLPNNVVSSVEKCSFLISKCVTARRVKLTNAVHGHLIKTALFFDAFLANGLIDAYSKCGCEESLRKTFDDLPNKTTRSWNTLISFYSKMGLFDKAHNLFDKMPQRNVVSYNSLISGFTRYDRHEDSIKLFRVMQNGRNVLVLDEFTVVSVVGSCACLGNAKWLHQVHGVAVIVGMEWNLILNNALIDAYGKCGEPDLSCSVFCWMPERNVVSWTSMVVAYSRACRLDDACEVFKDMPVKNTVSWTALITGFARNGRFGEAFDVFKEMLEEGVRPSAPTFVSIIDACAEEALIGRGKQVHGKIIRGGISGNLFNVYVCNALIDMYGKCGDMKSAENLFQMAPVRDVITWNTLITGFAQNGRGEDSLAVFRRMVEAKVEPNHVTFLGVLSGCSHAGLDNEGLELVDLMERKYGVKPKADHYALLIDLLGRKNRLKEAMSLTEKVPNEIMNHIAVWGAILGACRIHGNLDLARKAAEALFELEPNNTARYVMLANIYAACGRWGDAKRIRTVMKERCLKKEPAFSWIELRNLRHEFVAKDKLHPQIGEICEVNNKLVLHLKDAGYHQPYIDYPFHPDYDDDFYFN* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1611 582 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 567 - -
Pvu9g1611 582 Gene3D Tetratricopeptide repeat domain 398 557 IPR011990 GO:0005515
Pvu9g1611 582 Gene3D Tetratricopeptide repeat domain 9 171 IPR011990 GO:0005515
Pvu9g1611 582 TIGRFAM PPR: pentatricopeptide repeat domain 315 339 IPR002885 -
Pvu9g1611 582 TIGRFAM PPR: pentatricopeptide repeat domain 78 108 IPR002885 -
Pvu9g1611 582 TIGRFAM PPR: pentatricopeptide repeat domain 346 379 IPR002885 -
Pvu9g1611 582 TIGRFAM PPR: pentatricopeptide repeat domain 211 237 IPR002885 -
Pvu9g1611 582 TIGRFAM PPR: pentatricopeptide repeat domain 242 275 IPR002885 -
Pvu9g1611 582 TIGRFAM PPR: pentatricopeptide repeat domain 108 135 IPR002885 -
Pvu9g1611 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Pvu9g1611 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Pvu9g1611 582 PANTHER - 3 567 - -
Pvu9g1611 582 Pfam E motif 463 525 IPR046848 -
Pvu9g1611 582 Pfam PPR repeat family 239 287 IPR002885 -
Pvu9g1611 582 Pfam PPR repeat family 343 391 IPR002885 -
Pvu9g1611 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 239 IPR002885 -
Pvu9g1611 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Pvu9g1611 582 Gene3D Tetratricopeptide repeat domain 305 397 IPR011990 GO:0005515
Pvu9g1611 582 Gene3D Tetratricopeptide repeat domain 174 300 IPR011990 GO:0005515
Pvu9g1611 582 SUPERFAMILY TPR-like 252 506 IPR011990 GO:0005515
Pvu9g1611 582 Pfam PPR repeat 316 338 IPR002885 -
Pvu9g1611 582 Pfam PPR repeat 183 209 IPR002885 -
Pvu9g1611 582 Pfam PPR repeat 108 134 IPR002885 -
Pvu9g1611 582 Pfam PPR repeat 78 107 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1611 Pvu-Chr9 22661863 22663611 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1611 14 572 Glycoside Hydrolase AT3G49170 31.429 1.30e-86 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1611 - - var:108329989 1054.28