Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0583 ATGGCTCTCTCAACTTTTTCCCGCCGCGGCCTCGGATCCACTCTTGCAAAGCCCTTATCCGCCGCCGTCTCATCGCGCCCGATCTCCTCCGATGCCTCCCTCACCATCGAGACCTCCGTCCCCTTCACGGCGCACAACTGCGAGGCGCCGTCACGCGCCGTCACCACCTCTCCCTCCGAACTGCTTTCCTTTTTCCGTGACATGGCCCTCATGCGCCGCATGGAGATCGCTGCGGACTCTCTCTACAAGGCCAAACTCATCCGCGGATTTTGCCACCTCTACGACGGCCAGGAAGCCGTCGCCGTGGGCATGGAGGCCGGCATCACCAGAAAGGATTGCATCATCACCGCCTATCGTGACCACTGCACCTTCCTCGGCCGCGGTGGCACGCTGCTCGAGGTGTTCTCGGAGCTGATGGGACGCAAGGATGGGTGCTCGAAAGGGAAAGGGGGTTCGATGCACTTTTATAGGAAGGAGGGTGGGTTCTACGGCGGGCACGGGATCGTGGGGGCGCAGGTTCCGTTAGGGTGTGGTTTGGCGTTTGCGCAGAAGTATAGTAAGGATGAGAGTGTGACTTTTGCCTTGTATGGAGATGGGGCTGCCAACCAAGGACAACTTTTTGAGGCGCTTAACATTTCCGCGCTTTGGGATCTTCCTGCTATCTTAGTCTGCGAGAATAATCACTATGGGATGGGGACTGCGGAGTGGAGGGCTGCAAAGAGTCCTGCTTATTACAAGCGTGGGGATTATGTGCCTGGCTTGAAGGTAGATGGCATGGACGTTCTTGCTGTTAAGCAAGCTTGCAAATTTGCAAAAGAACATGCTTTGAAGAATGGGCCCATTATTCTTGAAATGGATACTTATAGATACCATGGTCACTCTATGTCTGATCCTGGCAGCACTTACCGCACACGTGATGAAATATCTGGTGTGAGACAGGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGTTATTGTCTCATGACATTGCTGCTGAAAAGGAGCTAAAGGACATTGAAAAGGAAGTCAGAAAAGAAGTCGATGAAGCCATTGCTAAAGCAAAGGAGAGTCCAATGCCAGACCCATCCGAATTATTTAGCCATGTCTACGTTAAAGGTTTAGGAGTTGAGGCATTTGGTGTTGATAGGAAAGTAGTGAGAGCTACTTTACCATAA 1176 0.5247 MALSTFSRRGLGSTLAKPLSAAVSSRPISSDASLTIETSVPFTAHNCEAPSRAVTTSPSELLSFFRDMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAGITRKDCIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSKGKGGSMHFYRKEGGFYGGHGIVGAQVPLGCGLAFAQKYSKDESVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLSHDIAAEKELKDIEKEVRKEVDEAIAKAKESPMPDPSELFSHVYVKGLGVEAFGVDRKVVRATLP* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0583 391 MobiDBLite consensus disorder prediction 294 313 - -
Vra5g0583 391 CDD TPP_E1_PDC_ADC_BCADC 64 354 - -
Vra5g0583 391 Pfam Dehydrogenase E1 component 67 362 IPR001017 GO:0016624
Vra5g0583 391 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 8 391 - -
Vra5g0583 391 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA, MITOCHONDRIAL 8 391 - -
Vra5g0583 391 Gene3D - 22 386 - -
Vra5g0583 391 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 48 372 IPR029061 -
Vra5g0583 391 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 59 371 IPR017597 GO:0004739|GO:0006086|GO:0043231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0583 Vra-Chr5 7628814 7635036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0583 1 391 Acyl Lipid Metabolism Gene Families AT1G24180 80.253 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0583 K00161 - gmx:100816737 712.605