Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1612 ATGGGTAGACATGGGGTCGTTCAAAAAGTGGTGGGTGACCTTTGTTTCCTCGATTCTTCACCCTTCGCGAAGTTATTGGACTCTTGCATTCGGTCAAAGTCTGGAATTGACGCGCGTCGCATTCATTGTCGAATCATTAAGGCACAGTTTTCATCTGAAATTTTCATTCAGAACAGGCTCGTCGATGCTTATGGAAAATGCGGCTGTTTTGAGGAGGCACGCAAGGTGTTTGTTCATATGCCGCTGAGGAATACTTTCAGTTATAATGCGATTTTAAGCGTTTTTACGAAGTTTGGTAAGCTTGACGAGGCTTTGAGCGTTTTTAAGTCGATGCCTGAGCCTGACCAATGCTCATGGAATGCTATGGTGTCGGGTTTTGCACAGCATGATCGGTTTGAGGAAGCGTTGAAGTTCTTTCTTGATATGCATAGTGAGGATTTTGTGGTTAATGAGTATTCGTTTGGGAGTGCTCTTAGTGCTTGTGCAGGGTTGACAGATTTGAATGTGGGGGTTCAAATCCATGCTTTGATATCAAAGTGTCGTTACTTACTAGATGTTTATATGGGCTCTGCTCTTGTTGATATGTACTCTAAGTGTGGAGTAGTGACTTGTGCGCAAAGGGCTTTTGATGAAATGGTTGTGAGGAATATAGTTTCTTGGAACAGTTTGATTACGTGTTATGAGCAAAATGGGCCAGCGCAAAAAGCTCTGGAGATTTTTGTTAGGATGATGGATAACAGGGTTGAACCTGATGAGATAACTATGGCCAGCGTGGTCAGTGCCTGTGCGAGCTTGTCAGCTACCAGAGAAGGTTTGCAAATTCATGCTCGTGTCATCAAACGGGATAAGTTTCGTAATGACCTTGTGTTAGGCAATGCATTAGTTGATATGTATGCAAAGTGCAAAAGAGTTAGGGAAGCTCGGTTGGTTTTTGATAGAATGCCAGTTAGGGATGTGGTGTCTGAAACTTCCATGGTTAGTGGATATGCCAGGGCAGCCAGTGTGAAAGCTGCAAGGTTGATGTTTTCAAAGATGATGGAGAGGAATGTTGTGTCCTGGAATGCTCTTATTGCAGGTTACACACAGAATGGAGAGAATGAGGAGGCAGTTAGACTTTTCCTCCTCCTGAAGAGGGATTCTCTCTGGCCAACCCATTATACCTTTGGGAATCTACTTAATGCGTGTGCAAATCTTGCCGATCTGAAACTTGGTAGACAGGCTCACACTCACATTTTGAAGCATGGATTTTGGTTTCAGTCTGGAGAAGAATCTGACATTTTTGTGGGGAATTCTCTCATTGATATGTACATGAAATGTGGAATGGTTGAAGATGGGTGCCTGATTTTTGAGCATATGGTAGAAAGAGATATTGTCTCATGGAATGCCATGATAGTGGGGTATGCACAAAATGGTTATGGCACAGATGCCCTCGAAATTTTCAGGAAAATGCTGCTATCTGGAGAAAAACCAGATCATGTTACTATGATTGGAGTTCTATCTGCATGTAGCCATGCAGGACTTGTTGAAGAAGGACGACGTTACTTCCACTCAATGAGGGCTGAGTATGGTTTAGCACCGTTGAAGGACCATTTTACATGCATGATTGATTTACTAGGTCGGGCTGGTTGCCTTGATGAAGCAAACGATTTGATGCAGACAATGCCGATGCAGCCTGATGCTGTTGTCTTGGGATCTCTACTTGCTGCTTGTAAGGTTCATGGAAACATTAAATTAGGAAAGTATGTAGCGGAAAAGCTCATGGAAATTGATCCCTTGAACTCTGGGCCTTACGTTCTTCTTTCAAATATGTATGCTGAGCTTGGAAGATGGAAAGATGTGGTGAAAGTCCGGAAACAGATGAGGCAGCAGGGAGTTGTTAAGCAACCTGGTTGCAGTTGGATTGAAATTCAGAGTCGTGTGCATGTTTTCATGGTAAAAGATAAAAGGCACCCTCGTAGAAAGGACATCCATCTAGTTCTGAAAATTCTCACAGAACAGATGAAGAGGGCTGGCTATGTGCCAGAAGCTGATGATGATGAGATTTGCGAGGAGGAAAGTGACTCTGAACTTGTCTTGCATTGTGAAATGGAATCCGAAGCTGATACTGCAGTTGCGTAA 2118 0.433 MGRHGVVQKVVGDLCFLDSSPFAKLLDSCIRSKSGIDARRIHCRIIKAQFSSEIFIQNRLVDAYGKCGCFEEARKVFVHMPLRNTFSYNAILSVFTKFGKLDEALSVFKSMPEPDQCSWNAMVSGFAQHDRFEEALKFFLDMHSEDFVVNEYSFGSALSACAGLTDLNVGVQIHALISKCRYLLDVYMGSALVDMYSKCGVVTCAQRAFDEMVVRNIVSWNSLITCYEQNGPAQKALEIFVRMMDNRVEPDEITMASVVSACASLSATREGLQIHARVIKRDKFRNDLVLGNALVDMYAKCKRVREARLVFDRMPVRDVVSETSMVSGYARAASVKAARLMFSKMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRDSLWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLIFEHMVERDIVSWNAMIVGYAQNGYGTDALEIFRKMLLSGEKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRAEYGLAPLKDHFTCMIDLLGRAGCLDEANDLMQTMPMQPDAVVLGSLLAACKVHGNIKLGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVKVRKQMRQQGVVKQPGCSWIEIQSRVHVFMVKDKRHPRRKDIHLVLKILTEQMKRAGYVPEADDDEICEEESDSELVLHCEMESEADTAVA* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1612 705 Gene3D Tetratricopeptide repeat domain 83 168 IPR011990 GO:0005515
Pvu9g1612 705 Gene3D Tetratricopeptide repeat domain 267 347 IPR011990 GO:0005515
Pvu9g1612 705 Gene3D Tetratricopeptide repeat domain 14 82 IPR011990 GO:0005515
Pvu9g1612 705 Gene3D Tetratricopeptide repeat domain 169 266 IPR011990 GO:0005515
Pvu9g1612 705 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 51 112 - -
Pvu9g1612 705 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 144 704 - -
Pvu9g1612 705 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 94 144 - -
Pvu9g1612 705 Gene3D Tetratricopeptide repeat domain 417 523 IPR011990 GO:0005515
Pvu9g1612 705 Gene3D Tetratricopeptide repeat domain 524 697 IPR011990 GO:0005515
Pvu9g1612 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 115 149 IPR002885 -
Pvu9g1612 705 TIGRFAM PPR: pentatricopeptide repeat domain 430 458 IPR002885 -
Pvu9g1612 705 TIGRFAM PPR: pentatricopeptide repeat domain 86 112 IPR002885 -
Pvu9g1612 705 TIGRFAM PPR: pentatricopeptide repeat domain 292 319 IPR002885 -
Pvu9g1612 705 TIGRFAM PPR: pentatricopeptide repeat domain 58 80 IPR002885 -
Pvu9g1612 705 TIGRFAM PPR: pentatricopeptide repeat domain 458 491 IPR002885 -
Pvu9g1612 705 TIGRFAM PPR: pentatricopeptide repeat domain 118 151 IPR002885 -
Pvu9g1612 705 TIGRFAM PPR: pentatricopeptide repeat domain 323 351 IPR002885 -
Pvu9g1612 705 TIGRFAM PPR: pentatricopeptide repeat domain 218 252 IPR002885 -
Pvu9g1612 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 455 IPR002885 -
Pvu9g1612 705 Gene3D Tetratricopeptide repeat domain 348 414 IPR011990 GO:0005515
Pvu9g1612 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Pvu9g1612 705 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 144 704 - -
Pvu9g1612 705 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 94 144 - -
Pvu9g1612 705 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 51 112 - -
Pvu9g1612 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Pvu9g1612 705 Pfam PPR repeat 86 112 IPR002885 -
Pvu9g1612 705 Pfam PPR repeat 531 554 IPR002885 -
Pvu9g1612 705 Pfam PPR repeat 292 317 IPR002885 -
Pvu9g1612 705 Pfam PPR repeat 58 81 IPR002885 -
Pvu9g1612 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Pvu9g1612 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 114 IPR002885 -
Pvu9g1612 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 593 627 IPR002885 -
Pvu9g1612 705 Pfam E motif 573 635 IPR046848 -
Pvu9g1612 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Pvu9g1612 705 Pfam PPR repeat family 114 162 IPR002885 -
Pvu9g1612 705 Pfam PPR repeat family 456 502 IPR002885 -
Pvu9g1612 705 Pfam PPR repeat family 348 397 IPR002885 -
Pvu9g1612 705 Pfam PPR repeat family 215 263 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1612 Pvu-Chr9 22663658 22668927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1612 17 677 Glycoside Hydrolase AT3G49170 31.309 1.47e-123 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1612 - - gmx:100804896 1290.4