Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01846 ATGCAGTTACGAAGATCAAATAATAACGGTATAAATAGTAAAAAGATTCATTTTGGTGAGTCTCCTAACGACGTCTTGTTTATGCGTTTAGCGTTTCACACGATGAGGAAGTTTGTCACCATCTTCTCCTTTTTCAAATCTAGGAAGAACTTTTCCAGTTCGCTTCATCGAAACTCTCCACGCTATTCCAATCAACTCCACCCTAATTTCAGGAACCTTACGCAGAAATGCGATTTACTACTACCACCTCTCTCTTCGCATCGATTTTTCTCCGATATCGCGGGGAATCCTTCCACATTGAATAGGAATCTTCTTCAGGACCAGGGCATTGATTTTCCTGGAGGAAGAGTAGAATTCGTCCCTGAAATGAAGTTTATATCAGAATCAGTTAAAGAGAGAATACCCTGCTACCGTGTCCTTGATGATAACGGGCAGCCGCTCGTGGGTCATAATTTTGTTCAGGTCAGCAAGGAAGTTGCTGTGAAGATGTACACTGACATGGTTACTCTCCGATCTATGGATACTATCTTCTATGAAGCACAAAGACAAGGTAGAATATCGTTTTATGTGACGACAATTGGAGAGGAGGCTATTAATATTGCTTCAGCTGCAGCTCTTTCCATGAACGATGTTGTTTTCCCTCAGTATAGGGAAGCTGGAGTCTTGTTATGGCGTGGTTTTACTCTGCAAGAATTTGCAAACCAGTTATTTTCTAATAAATATGATAATGGGAAAGGAAGGCAGATGCCAGCACATTATGGGTCCAAAAAGCACAATTACTTTACAATAGCATCAACTATTGCTACACAAATTTCTCATGCTGTTGGAGCTGCTTATTCCTTAAAGATGGATAAAAAGGATGCATGTGCTGTTACTTACTTTGGTGATGGTGGATCTAGTGAGGGAGATTTCCATGCTGCTTTAAATTTTGCAGCGGTTACGGAGTCCCCGGTTATTTTTATATGCCGGAACAATGGATGGGCTATTAGTACCCCCATTTCAGATCAGTTTCGAAGTGATGGTGTAGTCGTGAAAGGACAATCATATGGAGTCCGTAGCATCCGAGTAGATGGCAATGATGCCCTGGCCATCTATAGTGCTGTTCAAGCTGCTCGTCAAATGTCAATCACTGAAGAGAGACCGATCCTAATTGAAGCTCTTACGTACAGAGTGGGACACCATAGCACATCAGATGACTCCACCAAGTATCGTCCAGCAAGTGAGATTGAATGGTGGAGAGTGGCACGGGATCCTGTGGCTAGATTTAGAAAGTGGCTTGAAAATAATGGTTGGTGGAATGATCTGGCAGAGTCAGAGCTTATAAACAATTTGAGACAACAGCTTCTCCATACAATTCAAGTTGCAGAGAGTGTAGAGAAACCTCCACTTGAAGAAGCTTTTCGTGATGTTTATGATGTTCCTCCATCCAATCTCCGTGAGCAGGAGGAATGGCTGAAGGAGATTGTAAAAGAACAACCACAAGAGTATCCAGCAAATATTTCTGTGTAG 1509 0.4208 MQLRRSNNNGINSKKIHFGESPNDVLFMRLAFHTMRKFVTIFSFFKSRKNFSSSLHRNSPRYSNQLHPNFRNLTQKCDLLLPPLSSHRFFSDIAGNPSTLNRNLLQDQGIDFPGGRVEFVPEMKFISESVKERIPCYRVLDDNGQPLVGHNFVQVSKEVAVKMYTDMVTLRSMDTIFYEAQRQGRISFYVTTIGEEAINIASAAALSMNDVVFPQYREAGVLLWRGFTLQEFANQLFSNKYDNGKGRQMPAHYGSKKHNYFTIASTIATQISHAVGAAYSLKMDKKDACAVTYFGDGGSSEGDFHAALNFAAVTESPVIFICRNNGWAISTPISDQFRSDGVVVKGQSYGVRSIRVDGNDALAIYSAVQAARQMSITEERPILIEALTYRVGHHSTSDDSTKYRPASEIEWWRVARDPVARFRKWLENNGWWNDLAESELINNLRQQLLHTIQVAESVEKPPLEEAFRDVYDVPPSNLREQEEWLKEIVKEQPQEYPANISV 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01846 502 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 107 500 - -
Vimu10g01846 502 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 147 497 IPR029061 -
Vimu10g01846 502 CDD TPP_E1_PDC_ADC_BCADC 163 455 - -
Vimu10g01846 502 Gene3D - 105 501 - -
Vimu10g01846 502 FunFam 2-oxoisovalerate dehydrogenase subunit alpha 105 501 - -
Vimu10g01846 502 Pfam Dehydrogenase E1 component 166 462 IPR001017 GO:0016624
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01846 Vimu-Chr10 26309525 26316663 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01846 108 340 Acyl Lipid Metabolism Gene Families AT5G09300 78.970 4.42e-137 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01846 K00166 - gmx:100779198 789.645