Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0512 ATGGGGGATGCTGACAATGCCCTTCCACCTTCAAAGAAAAGGGCTGCTGGAAGGGAGCTCTCTCGAGACACTCCCATTGATGATGAGGATGATGCCCCAGAACCTGAGGCTGGATCTTTTAAGAAGGCCAGTGATGAAGTTATGGCAACCAGGAGAATAGTTAAAGTTCGTCGCCAACAGAGCAATTCTGCTCCATCAACAAATCCTTTTGCTGGAATACGTTTGATTTCTCATCCTGAGTCGAGTGCTAAACCTGCAGAAGCTATCCCCGTAGCACAAACTAGTGAGAACACTGTTGCAGATGATACAAAATGTACTGACAAGGTAACCCATGATTCTGAGAAAGCTAAAGATGGGGATGACAAACAATTAGAGAGCAAAGCTGATGAGATGGGAAATAAATCTGCTGAAATTAAGGATTCTGTTGAGGGAGAGAAAGCTGCAGAGGAGAGCATGGGGGAAAAATCTGAGGTAGGCAAACAGCAAAGAAAGGATCAGGATAAAAATGAGGAGAAGGAAGCTGAAGATAAGGAGACTGCTGGCAAGGTGGATAAAGAACAAACTAATAAAATTGATAATGAGGATAGGGAAGATGCTGAAACTAAAGAGAGTGCTGGTGAGGTGGATAAAGAACAAACTAATAAAAATGATAACGAGGATAAGAAGGATGCTGAAGATAAAGAGAATGCCGGTGACGTGGAAAAAGAACAAACTAAGGATGGCAATGATACAGTAAATGATGATCAGAAAGAGAACACGGTTGAAAGTCAAGAGCCTGGTTCAGAAGGATCTTCTTTGAAGTCATTTCAACAGCTTTCAAGCAGCCAAAATGCATTTAGTGGTCTTGCTGGAACTGGACTTTCTGCTCCCTCATTTACCTTTGGGTCTTTATCAAATGAAGGGTCTGCTTTGGGTAGTGGTTCTGGTTCAATTTTTGGAATGAAAAATGATAAGCCTTTTGGTCTGGGTTTATCTAACAATGGAACTTCTGTTTTTGGGGCAACTGGTGCCTCTGCTGCTGCTAAAGGTGAGGGAAGTGGTTTCCCAACGATGCAGGAGGTCGTAGTTGAGACGGGCGAGGAAAACGAGAAAGTGGTTTTCAATGCAGATTCAATATTATTCGAGTTTGTTGAGGGAAGTTGGAAGGAACGAGGAAAGGGTGAACTGAAGGTCAATGTTTCTGCAGGAGGGAATGAAAAGGCAAGACTTCTTATGAGGACGAGGGGAAATTACAGGCTGATATTAAATGCGCGTCTGTTCCCTGATATAAAGCTCACCAATATGGAGAAGAAAGGTGTTACTTTTGCCTGCATCAATAGTGCCAATGAAGGGAAGGACGGCCTCTCAACATTCGCCTTGAAATTCAAAGACGGGTCGATAGTAGAGGAATTTAAAGCGGCGGTCATGGCTCATAAGGGCGAGAAAGCGGTGACAGTTCTCAAGACCCCAGAAAACTCCCCCAAGGCATCCGATGGTTAA 1479 0.4375 MGDADNALPPSKKRAAGRELSRDTPIDDEDDAPEPEAGSFKKASDEVMATRRIVKVRRQQSNSAPSTNPFAGIRLISHPESSAKPAEAIPVAQTSENTVADDTKCTDKVTHDSEKAKDGDDKQLESKADEMGNKSAEIKDSVEGEKAAEESMGEKSEVGKQQRKDQDKNEEKEAEDKETAGKVDKEQTNKIDNEDREDAETKESAGEVDKEQTNKNDNEDKKDAEDKENAGDVEKEQTKDGNDTVNDDQKENTVESQEPGSEGSSLKSFQQLSSSQNAFSGLAGTGLSAPSFTFGSLSNEGSALGSGSGSIFGMKNDKPFGLGLSNNGTSVFGATGASAAAKGEGSGFPTMQEVVVETGEENEKVVFNADSILFEFVEGSWKERGKGELKVNVSAGGNEKARLLMRTRGNYRLILNARLFPDIKLTNMEKKGVTFACINSANEGKDGLSTFALKFKDGSIVEEFKAAVMAHKGEKAVTVLKTPENSPKASDG 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0512 492 SMART ranbd_3 348 471 IPR000156 GO:0046907
Lele44g0512 492 MobiDBLite consensus disorder prediction 35 53 - -
Lele44g0512 492 MobiDBLite consensus disorder prediction 101 255 - -
Lele44g0512 492 MobiDBLite consensus disorder prediction 256 272 - -
Lele44g0512 492 MobiDBLite consensus disorder prediction 55 70 - -
Lele44g0512 492 PANTHER RAN BINDING PROTEIN 29 475 IPR045255 -
Lele44g0512 492 Gene3D - 287 471 IPR011993 -
Lele44g0512 492 Pfam RanBP1 domain 356 468 IPR000156 GO:0046907
Lele44g0512 492 Pfam NUP50 (Nucleoporin 50 kDa) 13 73 IPR015007 GO:0005643
Lele44g0512 492 MobiDBLite consensus disorder prediction 1 272 - -
Lele44g0512 492 ProSiteProfiles Ran binding domain type 1 profile. 349 468 IPR000156 GO:0046907
Lele44g0512 492 CDD RanBD_NUP50_plant 358 473 IPR045207 -
Lele44g0512 492 SUPERFAMILY PH domain-like 349 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0512 Lele-ChrLele44 3946590 3948068 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele44g0512 44 3946590 3948068 Lele37g0444 37 3632290 3643984 CCT
Lele44g0512 44 3946590 3948068 Lele38g0411 38 3295877 3301752 CCT
Lele44g0512 44 3946590 3948068 Lele39g0984 39 18662010 18675910 CCT
Lele44g0512 44 3946590 3948068 Lele40g0389 40 3141582 3155886 CCT
Lele41g0843 41 18138221 18139573 Lele44g0512 44 3946590 3948068 hybridization
Lele42g0833 42 21232359 21233840 Lele44g0512 44 3946590 3948068 hybridization