Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0389 ATGGGTGCCTCTCTGCCCCCCAAGGAGGCCAACCTGTTCAAGCATATTGTTAAATCATATGAAACAAAACAATACAAAAAGGGACTCAAAGCAGCTGATGCTATTCTGAAAAAAATTCCGGACCATGGAGAAACTTTATCAATGAAGGGTTTGACGTTGAATTGCATGGATCGTAAGTCTGAAGCATATGAACTTGTTCATCAAGGACTAAAGAATGACCTCAAAAGTCATGTTTGCTGGCATGTTTATGGTCTTCTTTATCGGTCTGACAGAGAATATAGGGAGGCCATTAAGTGCTACCGCAATGCATTGAAAATAGATCCTGAGAATATTGAAATCTTACGTGACCTATCACTTTTACAGGCTCAGATGCGAGATTTAACAGGTTTTGTTGAGACAAGACAAAAACTTCTGACTCTTAAACCAAATCATCGCATGAACTGGATTGGCTTTGCAGTTTCCCATCATTTGAATTCTAATGCATCCAAGGCGGTTGAAATTCTGGAAGCATATGAAGGTACCTTAGAAGATGATTATCCTCCTGAAAACGAACGGTGTGAGCATGGGGAAATGCTTTTATACAAGATCTCTCTGTTAGAGGAAAGTGGATTTCTTGAGAGTGCTCTTGAGGAGTTGCACAAAAAAGAATCTAAAATTGTTGATAAACTCGCATATAAAGAACAAGAGGTTTCTCTTATCGTGAAGCTTGGTCACTTGAAAGAGGGTGAAAAATTGTATCAGGTGCTTTTGTCCATGAATCCTGACAATTATAGATACTATGAAGGACTCCAAAAATGTGTAGGGTTATATTCAAAAGATGGCCAGTATGCTCCAGATGAAATAGATCGGCTGGATGCTTTGTACAAATCGCTTGAGCAGCAGTATAAGTGGTCTTCTGCTGTGAAGAGAATACCACTTGATTTTTTGCAAGGTGACAAGTTTCGAGAAGAAGCAGAAAATTATATTCGGTCTCACTTAACTAAGGGAGTTCCGTCGCTGTTCTCGGATCTTTCTTCTCTGTACAATCATCCTGGGAAGGCAGATATGTTGGAGCAACTCATTCTTGAGTTAGAGCATTCAGTTAGGACAACTGGTCAATACCCTGGAAGAGTGGACAAAGAGCCCCCTTCAACTCTGATGTGGACTTTGTTCTTATTGGCTCAGCATTATGACAGACGGGGCCAATATGAAATTGCTCTTTCTCGAATTGATGAAGCTATAAAGCACGCACCTACTGTCATTGATCTATATTCTGTCAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGCTGCTGCTGCTGCACTTGCAGATGAAGCTAGGTGTATGGATCTTGCTGATCGAAATGTCAATAGTGAATGTGTTAAGCGCATGTTACAGGCTGATCAGGTGGCTATGGCAGAAAAAACTGCAGTCATGTTCACAAAAGATGGGGATCAACACAACAACCTCCATGACATGCAGTGCATGTGGTATGAGCTGGCATCTGGTGAAAGTTATTTTCGCCAAGTTGATCTTGGCCGAGCTCTGAAGAAATATTTAGCTGTAGAAAAGCATTATGCAGATATTACTGAAGACCAATTTGATTTCCATTCATACTGCTTAAGGAAAATGACTTTGCGAACTTATGTGGAGATGCTTAGATTACAAGATCGATTGCACTCACATGCATATTTTCACAAAGCAGCTGCTGGAGCAATCAGATGTTACCTGAAATTGTATGATTCTCCTTTGAAGTCTACAACTGAGGAGGAGGATGACATGTCAAAGTTGCTTCCTTCTCAGAAAAAGAAATTGAGGCAAAAACAGAGAAAGGCAGAAGCGCGGGCAAAGAAAGAGGAAGAAGAGAAGAATGGAGAGTCAAATGCTAGTGGTGTGTCAAAGTCTGGAAAACGGCATGCGAAACCTGTTGATCCAGATCCACGTGGTGAAAAGTTGTTGCAGGTTGAAGATCCACTATTAGAAGCCGCAAAATATCTGAAGTTGCTGCTGAAGAATTCAACTGATTCATTGGAGACACATTTGCTCTCTTTTGAATTGTATATCAGAAAGCAGAAGATTTTGCTTGCCTTTCGGGCTGTAAAGCAGTTATTGAGATTGGATGATGAGCACCCTGATTCTCATCGTTGCTTGATTAAATTCTTTCATAAAGTGGCATCCATGAATGTTCCTGTGACGGACAGCGAGAAGCTCATTTGGAGTGTCTTAGAAGTTGAACGTCCAACAATTAGTCAGTTGCATGAGAAGTCCCTGCTTGAGGCAAACATCTCTTTCCTTGAAAAACATAAAGATTCTTTGATGCACAGAGCCGCTGCTGCCGAAATGTTATGCACCTTGGATCCCAACAGAAAATCTGAAGCTGTCAAGTTGATTGAAGAGTCACCGAGTGACTGTGTGCCAAGAAATGGTGTGGTTAGAGCAATTAGGGAATGGAAACTCAAAGATTGCATCGCTGTTCATAAACTTCTAGAGACAGTCCTTGTTGAGCCAGATGCTGCTTTGAGATGGAAAGTGCGTTGTAAAGAGCTTTTCCCTTATTCTACATACTTTGAGGGCAGCCGCAGTTCTGTTTCTCCCAACTCGGCCTTCAATCAGATATGTAATAACTTTTTCAATGGGAGTATTAGCCATTCAATGGACGGCCAAAATGTGGATTCCTTCCCATCAAATGGGAAACTAGATGCATTTAAAGACCTCTCCATATCACAAAGTTGA 2715 0.4118 MGASLPPKEANLFKHIVKSYETKQYKKGLKAADAILKKIPDHGETLSMKGLTLNCMDRKSEAYELVHQGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALKIDPENIEILRDLSLLQAQMRDLTGFVETRQKLLTLKPNHRMNWIGFAVSHHLNSNASKAVEILEAYEGTLEDDYPPENERCEHGEMLLYKISLLEESGFLESALEELHKKESKIVDKLAYKEQEVSLIVKLGHLKEGEKLYQVLLSMNPDNYRYYEGLQKCVGLYSKDGQYAPDEIDRLDALYKSLEQQYKWSSAVKRIPLDFLQGDKFREEAENYIRSHLTKGVPSLFSDLSSLYNHPGKADMLEQLILELEHSVRTTGQYPGRVDKEPPSTLMWTLFLLAQHYDRRGQYEIALSRIDEAIKHAPTVIDLYSVKSRILKHAGDLAAAAALADEARCMDLADRNVNSECVKRMLQADQVAMAEKTAVMFTKDGDQHNNLHDMQCMWYELASGESYFRQVDLGRALKKYLAVEKHYADITEDQFDFHSYCLRKMTLRTYVEMLRLQDRLHSHAYFHKAAAGAIRCYLKLYDSPLKSTTEEEDDMSKLLPSQKKKLRQKQRKAEARAKKEEEEKNGESNASGVSKSGKRHAKPVDPDPRGEKLLQVEDPLLEAAKYLKLLLKNSTDSLETHLLSFELYIRKQKILLAFRAVKQLLRLDDEHPDSHRCLIKFFHKVASMNVPVTDSEKLIWSVLEVERPTISQLHEKSLLEANISFLEKHKDSLMHRAAAAEMLCTLDPNRKSEAVKLIEESPSDCVPRNGVVRAIREWKLKDCIAVHKLLETVLVEPDAALRWKVRCKELFPYSTYFEGSRSSVSPNSAFNQICNNFFNGSISHSMDGQNVDSFPSNGKLDAFKDLSISQS 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0389 904 PIRSF NAT_A 1 818 IPR021183 -
Lele40g0389 904 FunFam N-terminal acetyltransferase catalytic subunit (NAT1) 505 725 - -
Lele40g0389 904 Coils Coil 596 623 - -
Lele40g0389 904 MobiDBLite consensus disorder prediction 631 645 - -
Lele40g0389 904 FunFam N-terminal acetyltransferase A, auxiliary subunit 2 503 - -
Lele40g0389 904 SUPERFAMILY TPR-like 133 435 IPR011990 GO:0005515
Lele40g0389 904 MobiDBLite consensus disorder prediction 582 645 - -
Lele40g0389 904 Gene3D - 2 503 - -
Lele40g0389 904 SUPERFAMILY TPR-like 19 158 IPR011990 GO:0005515
Lele40g0389 904 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 696 IPR021183 -
Lele40g0389 904 Pfam TPR repeat 84 123 - -
Lele40g0389 904 SMART tpr_5 380 413 IPR019734 GO:0005515
Lele40g0389 904 SMART tpr_5 43 76 IPR019734 GO:0005515
Lele40g0389 904 SMART tpr_5 77 110 IPR019734 GO:0005515
Lele40g0389 904 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 1 826 - -
Lele40g0389 904 SUPERFAMILY TPR-like 381 717 IPR011990 GO:0005515
Lele40g0389 904 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Lele40g0389 904 MobiDBLite consensus disorder prediction 606 621 - -
Lele40g0389 904 Gene3D - 505 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0389 Lele-ChrLele40 3141582 3155886 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0549 43 4959059 4960552 Lele40g0389 40 3141582 3155886 CCT
Lele44g0512 44 3946590 3948068 Lele40g0389 40 3141582 3155886 CCT
Lele40g0389 40 3141582 3155886 Lele40g0389 40 3141582 3155886 ECH
Lele37g0444 37 3632290 3643984 Lele40g0389 40 3141582 3155886 hybridization
Lele38g0411 38 3295877 3301752 Lele40g0389 40 3141582 3155886 hybridization