Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0411 ATGCCGGGAGTCGCTCTTGCTTCTCCTTCACTACCTGTCAAATCATATGAAACAAAACAATACAAAAAGGGACTCAAAGCAGCTGATGCTATTCTGAAAAAAATTCCAGACCATGGAGAAACTTTATCAATGAAGGGTTTGACATTGAATTGCATGGATCGTAAGTCTGAAGCATATGAACTTGTTCTTCAAGGACTAAAGAATGGCCTCAAAAGTCATGTTTGCTGGCATGTTTATGGTCTTCTTTATCGGTTTGACAGAGAATATAGGGAGGCCATTAAGTGCTACCGCAATGCATTGAAAATAGATCCTGACAATATTGAAATCTTACGTGACCTATCACTTTTACAGGCTCAGATGCGAGATTTAACAGGTTTTGTTGAGACAAGACAAAAACTTCTGACTCTTAAACCAAATCATCTCATGAACTGGATTGGCTTTGCAGTTTCCCATCATTTGAATTCTAATCAGTTGCATGAGAAGTCCCTGCTTGAGGCAAACATCTCTTTCCTTGAAAAACATAAAGATTCTTTGATGCACAGAGCCGCTGCTGCTGAAATGTTATGCACCTTGGATCCCAACAGAAAATCTGAAGCTGTCAAGTTGATTGAAGAGTCACTGAGTGACTGTGTGCCAAGAAATGGCGTGGTTAGAGCAATTAGGGAATGGAAACTCAAAGATTGCATCGCTGTTCATAAACTTCTAGAGACAGTCCTTATTGAGCCAGATGCTGCATTGAGATGGAAAGTGCGTTGTAAAGAGCTTTTCCCTTATTCTACATACTTTGAGGGCAGCCGCAGTTCTGTTTCTCCCAACTCGGCCTTCAATCAGATATGTAATAACTTTGTAAATGGGAGTATTAGCCATTCAATGGACGGCCAAAATGTGGATTCGTTCCCATCAAATGGGAAACTAGATGCATTTAAAGACCTCTCTATATCACAAAACCGAGTTCCAGGTCACGGCAACAAGGGGTGGTCGAGTTTTGATGCGTGTTATGCAAAATTCTACATAGAAACCACAGGTGTGGTTCATTGCACAACTTTTCCCCCAGCTCTGGAATGTATTCCTTTGCGCAGATGGAGGGCTGATAAGGCATGTACTCTTGATCAATATTTTATGGATGACTTAGGTGGTAGCATTAAAGGCTGCAACTTCATTAGAGTGCATCTTCTTCAGGAAAGCAACTACCAGCCATCTTAG 1203 0.4115 MPGVALASPSLPVKSYETKQYKKGLKAADAILKKIPDHGETLSMKGLTLNCMDRKSEAYELVLQGLKNGLKSHVCWHVYGLLYRFDREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLTGFVETRQKLLTLKPNHLMNWIGFAVSHHLNSNQLHEKSLLEANISFLEKHKDSLMHRAAAAEMLCTLDPNRKSEAVKLIEESLSDCVPRNGVVRAIREWKLKDCIAVHKLLETVLIEPDAALRWKVRCKELFPYSTYFEGSRSSVSPNSAFNQICNNFVNGSISHSMDGQNVDSFPSNGKLDAFKDLSISQNRVPGHGNKGWSSFDACYAKFYIETTGVVHCTTFPPALECIPLRRWRADKACTLDQYFMDDLGGSIKGCNFIRVHLLQESNYQPS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0411 400 ProSiteProfiles TPR repeat profile. 73 106 IPR019734 GO:0005515
Lele38g0411 400 SMART tpr_5 73 106 IPR019734 GO:0005515
Lele38g0411 400 Pfam TPR repeat 88 119 - -
Lele38g0411 400 Gene3D - 11 227 - -
Lele38g0411 400 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 157 238 - -
Lele38g0411 400 SUPERFAMILY TPR-like 16 153 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0411 Lele-ChrLele38 3295877 3301752 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0549 43 4959059 4960552 Lele38g0411 38 3295877 3301752 CCT
Lele44g0512 44 3946590 3948068 Lele38g0411 38 3295877 3301752 CCT
Lele38g0411 38 3295877 3301752 Lele38g0411 38 3295877 3301752 ECH
Lele38g0411 38 3295877 3301752 Lele39g0984 39 18662010 18675910 hybridization
Lele38g0411 38 3295877 3301752 Lele40g0389 40 3141582 3155886 hybridization