Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0444 ATGGGTGCTTCTCTGCCCCCAAGGGAGGCCAACCTCTTCAAGCTTATTGTTAAATCATACGAAACAAAACAATACAAAAAGGGACTCAAAGCAGCTGATGCTATTCTGAAAAAATTTCCGGACCATGGAGAAACTTTATCAATGAAGGGTTTGACATTGAATTGCATGGATCGTAAGTCTGAAGCATATGAACTTGTTCGTCAAGGACTAAAGAATGACCTCAAAAGTCATGTTTGCTGGCATGTTTATGGTCTTCTTTATCGGTCAGACAGAGAATATAGGGAGGCCATTAAGTGCTACCGCAATGCATTGAAAATAGATCCTGACAATATTGAAATCTTACGTGACCTATCACTTTTACAGGCTCAGATGCGAGATTTGACAGGTTTTGTTGAGACAAGACAAAAACTTCTGACTCTTAAACCAAATCATCGCATGAACTGGATTGGCTTTGCAGTTTCCCATCATTTGAATTCTAATGCGTCCAAGGCAGTTGAAATTCTGGAAGCATATGAAGGTACCTTAGAAGATGATTATCCTCCGGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTATACAAGATCTCTTTGTTAGAGGAAAGTGGATTTCTTGAGAGAGCTCTTGAGGAGTTGCACAAAAAAGAATCGAAAATTGTGGATAAACTCGCATATAAAGAACAAGAGGTTTCTCTTATAGTGAAGCTTGGCCGCTTGAAAGAGGGTGAAAAATTGTATCAGGCGCTTTTGTTCCTGAATCCTGACAATTATAGATACTATGAAGGACTCCAAAAATGTGTTGGGTTATATTCAAAAGATGGCCAGTATGCTCCAGATGAAATAGATCGGCTGGATGCTCTGTACAAATCACTTGAGCAGCAGTATAAGTGGTCTTCTGCTGTGAAGAGAATACCACTTGATTTTTTGCAAGGTGACAAGTTTCGAGAAGCAGCAGGAAATTATATTCGGTCTCGCCTAACTAAGGGAGTTCCGTCACTGTTCTCTGATCTTTCTTCTCTGTATAATCATCTTGGGAAGGCAGATATTTTGGAGCAGCTCATTCTTGAGTTAGAGCATTCAATTAGGACAACTGGTCAATACCCTGGACGAGTGGACAAAGAGCCCCCTTCAACTCTGATGTGGACTTTGTTCTTATTGGCTCAGCATTATGACAGACGGGGCCAATATGAAATTGCTCTTTCTCGAATTGATGAAGCCATAAAGCACACACCTACTGTCATTGATCTATATTCTGTCAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGCTGCTGCTGCTGCACTTGCAGATGAAGCTAGGTGTATGGATCTTGCTGATCGATATGTTAATAGTGAGTGTGTTAAGCGCATGTTACAGGCTGATCAGGTGTCTATGGCAGAAAAAACTGCAGTCTTGTTCTCAAAAGATGGGGACCAACACAACAACCTCCATGACATGCAGTGCATGTGGTATGAGCTGGCATCTGGTGAAAGTTATTTTCGCCAATGTGATCTTGGCCAGGCTCTGAAGAAATATTTAGCTGTAGAAAAGCATTATGCAGATATTACTGAAGATCAATTTGATTTCCATTCATACTGCTTAAGGAAAATGACTTTGCGCACTTATGTGGAGATGCTTAGATTACAAGATCGATTGCACTCACATGCATATTTTCACAAAGCAGCTGCTGGAGCAATCAGATGTTACCTGAAATTGTATGATTCTCCTTTGAAGTCTACAACTGAGGAGGAGGATGACACATCAAAGTTGCTTCCTTCTCAGAAAAAGAAATTGAGGCAAAAACAGAGAAAGGCTGAAGCACGGGCTAAGAAAGAGGCAGAAGAGAAGAATGGAGAGTCAAATGCCAGTGGTGTGTCAAAGTCTGGAAAACGGCATGTGAAACCTGTTGATCCAGATCCACATGGTGAAAAGTTGTTGCAGGTTGAAGATCCACTATTAGAAGCCACAAAATATCTGAAGTTGCTGCTGAAGAATTCACCTGATTCATTGGAGACACATTTGCTCTCGTTTGAATTATATATCAGAAAACAGAAGATTTTGCTTGCCTTTCAGGCTTTAAAGCATTTATTGAGATTGGATGCTGAGCACCCTGATTCTCATCGTTGCTTGATTAAATTCTTTCATAAAGTGGGATCCATGAATGTTCCTGTGACTGACGGCGAGAAACTCATTTGGAGTGTCTTAGAAGCTGAACGCCCAACAATTAGGTTTTCCAACATTTCTTCTTATACCTATTCCCTTTTTCAGTTGCATGAGAAGTCCCTGCTTGAGGCAAACATCTCTTTCCTTGAAAAACATAAAGATTCTTTGATGCACACAGCCGCTGCTGCTGAAATGTTGTGCACCTTGGATCCCAACAGAAAATCTGAAGCTGTCAAGTTGGTTGAAGAGTCTCTGAGTGACCATGCGCCAAGAAATGGAGTGGTTGGAGCAATCAGGGAATGGAAACTCAAAGATTGCATTGCTGTTCATAAACTTCTAGAGACAGTCCTTGTTGAGCCAGATGCTGCATCGAGATGGAAAGTGCGTTGTAAAGAGCTTTTTCCTTATTCTACATACTTTGAGGGCAGCCGCAGTTCTGTTTCTCCCAACTCGGCCTTTAATCAGATATGTAATAACTTCAAAAATGGGAGTATTAACCATTCAATGGATGGCCAAAATGTGGATTCCTTCACATCAAATGGGAAACTAGACGCATTCAAAGGCCTCTCCATATCACAAAGTTGA 2751 0.4111 MGASLPPREANLFKLIVKSYETKQYKKGLKAADAILKKFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLTGFVETRQKLLTLKPNHRMNWIGFAVSHHLNSNASKAVEILEAYEGTLEDDYPPENERCEHGEMLLYKISLLEESGFLERALEELHKKESKIVDKLAYKEQEVSLIVKLGRLKEGEKLYQALLFLNPDNYRYYEGLQKCVGLYSKDGQYAPDEIDRLDALYKSLEQQYKWSSAVKRIPLDFLQGDKFREAAGNYIRSRLTKGVPSLFSDLSSLYNHLGKADILEQLILELEHSIRTTGQYPGRVDKEPPSTLMWTLFLLAQHYDRRGQYEIALSRIDEAIKHTPTVIDLYSVKSRILKHAGDLAAAAALADEARCMDLADRYVNSECVKRMLQADQVSMAEKTAVLFSKDGDQHNNLHDMQCMWYELASGESYFRQCDLGQALKKYLAVEKHYADITEDQFDFHSYCLRKMTLRTYVEMLRLQDRLHSHAYFHKAAAGAIRCYLKLYDSPLKSTTEEEDDTSKLLPSQKKKLRQKQRKAEARAKKEAEEKNGESNASGVSKSGKRHVKPVDPDPHGEKLLQVEDPLLEATKYLKLLLKNSPDSLETHLLSFELYIRKQKILLAFQALKHLLRLDAEHPDSHRCLIKFFHKVGSMNVPVTDGEKLIWSVLEAERPTIRFSNISSYTYSLFQLHEKSLLEANISFLEKHKDSLMHTAAAAEMLCTLDPNRKSEAVKLVEESLSDHAPRNGVVGAIREWKLKDCIAVHKLLETVLVEPDAASRWKVRCKELFPYSTYFEGSRSSVSPNSAFNQICNNFKNGSINHSMDGQNVDSFTSNGKLDAFKGLSISQS 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0444 916 SUPERFAMILY TPR-like 381 707 IPR011990 GO:0005515
Lele37g0444 916 Coils Coil 596 620 - -
Lele37g0444 916 Pfam TPR repeat 84 123 - -
Lele37g0444 916 MobiDBLite consensus disorder prediction 582 647 - -
Lele37g0444 916 PIRSF NAT_A 1 830 IPR021183 -
Lele37g0444 916 SUPERFAMILY TPR-like 18 158 IPR011990 GO:0005515
Lele37g0444 916 SUPERFAMILY TPR-like 132 435 IPR011990 GO:0005515
Lele37g0444 916 Gene3D - 2 503 - -
Lele37g0444 916 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 696 IPR021183 -
Lele37g0444 916 FunFam N-terminal acetyltransferase catalytic subunit (NAT1) 505 725 - -
Lele37g0444 916 SMART tpr_5 43 76 IPR019734 GO:0005515
Lele37g0444 916 SMART tpr_5 77 110 IPR019734 GO:0005515
Lele37g0444 916 SMART tpr_5 380 413 IPR019734 GO:0005515
Lele37g0444 916 FunFam N-terminal acetyltransferase A, auxiliary subunit 2 503 - -
Lele37g0444 916 Gene3D - 505 724 - -
Lele37g0444 916 MobiDBLite consensus disorder prediction 631 647 - -
Lele37g0444 916 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Lele37g0444 916 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 1 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0444 Lele-ChrLele37 3632290 3643984 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0549 43 4959059 4960552 Lele37g0444 37 3632290 3643984 CCT
Lele44g0512 44 3946590 3948068 Lele37g0444 37 3632290 3643984 CCT
Lele37g0444 37 3632290 3643984 Lele37g0444 37 3632290 3643984 ECH
Lele37g0444 37 3632290 3643984 Lele39g0984 39 18662010 18675910 hybridization
Lele37g0444 37 3632290 3643984 Lele40g0389 40 3141582 3155886 hybridization