Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0833 ATGGGGGATGCTGACAATGCCCTTCCACCTTCAAAGAAAAGGGCTGCTGGAAGGGAGCTCTCTCGAGACACTCCCATTGATGATGAGGACGATGCCCCAGAACCTGAGGCTGGATCTTTTAAGAAGGCCAGTGATGAAGTTATGGCAACCAGGAGAATAGTTAAAGTTCGTCGCCAACAGAGCAATTCTGCTCCATCAACAAATCCTTTTGCTGGAATACGTTTGGTTTCTCCTCCTGAGTCGAGTGCTAAACCTGCAGAAGCTATCCCCATAGCACAAACTAGTGAGAACACTGTTGCAGATGATACAAAATGTACTGACAAGGTAACCAATGATTCTGAGAAAGCTAAAGATGGGGATGACAAACAATTAGAGAGCAAAGCTGATGAGTTGGGAAATAAATCTGCTGAAATTAAGGATTCTGTTGATGGAGAGAAAACTGCAGAGGAGAGCATGGGTGAAAAATATGAGGTAGGCAAACAGCAAAGAAAGGATCAGGATAAAAATGAGGAGAAGAAGGAAGCTGAAGATAAGGAGACTGCTGGCGAGGTGGATAAAGAACAAACTAATACAATTGATAATGAGGATAGGGAAGATGCTGAAGCTAAAGAGAGTGCTGGTGAGGTGGATAAAGAACAAACTAATAAAAATGATAATGAGGATAAGAAGGATGCTGAAGATAAAGAGAATGCGGGTGATGTGGAAAAAGAACAAACTAAGGATGGCAATGATACATTAAATGATGATCAGAAAGAGAACACGGTTGAAAGTCAAGAGCCTGGTTCAGAAGGATCTTCTTTGAAGTCATTTCAACAGCTTTCAAGCAGCCAAAATGCATTTAGTGGTCTTGCTGGAACTGGATTTTCTGCTCCCTCATTTACCTTTGGGTCTTTATCAAATGAAGGGTCTGCTTTGGGTAGTGGTTCTGGTTCAATTTTTGGAATGAAAAATGATAAGCCTTTTGGTCTGGGTTTATCTAACAATGGAACTTCTGTTTTTGGGGCAACTGGTGCCTCTGCTGCTGCTAAAGGTGAGGGAAGTGGTTTCCCAACGATGCAGGAGGTCATAGTTGAGACGGGCGAGGAAAACGAGAAAGTGGTTTTCAATGCAGATTCAATATTATTCGAGTTTGTTGAGGGAAGTTGGAAGGAACGAGGAAAGGGTGAACTGAAGGTCAATGTTTCTACAGGAGGGAATGAAAAGGCAAGACTTCTTATGAGGACGAGGGGAAATTACAGGCTGATATTAAATGCGCGTCTGTTCCCTGATATAAAGCTCACCAATATGGAGAAGAAAGGTGTTACTTTTGCCTGCATCAATAGTGCCAATGAAGGGAAGGACGGCCTCTCAACATTCGCCTTGAAATTCAAAGACGGGTCGATAGTAGAGGAATTTAAAGCGGTGGTCATGGCTCATAAGGGCGAGAAAGCGGTGACAGTTCTCAAGACCCCAGAAAACTCCCCCAAGGCATCTGATGGTTAA 1482 0.4318 MGDADNALPPSKKRAAGRELSRDTPIDDEDDAPEPEAGSFKKASDEVMATRRIVKVRRQQSNSAPSTNPFAGIRLVSPPESSAKPAEAIPIAQTSENTVADDTKCTDKVTNDSEKAKDGDDKQLESKADELGNKSAEIKDSVDGEKTAEESMGEKYEVGKQQRKDQDKNEEKKEAEDKETAGEVDKEQTNTIDNEDREDAEAKESAGEVDKEQTNKNDNEDKKDAEDKENAGDVEKEQTKDGNDTLNDDQKENTVESQEPGSEGSSLKSFQQLSSSQNAFSGLAGTGFSAPSFTFGSLSNEGSALGSGSGSIFGMKNDKPFGLGLSNNGTSVFGATGASAAAKGEGSGFPTMQEVIVETGEENEKVVFNADSILFEFVEGSWKERGKGELKVNVSTGGNEKARLLMRTRGNYRLILNARLFPDIKLTNMEKKGVTFACINSANEGKDGLSTFALKFKDGSIVEEFKAVVMAHKGEKAVTVLKTPENSPKASDG 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0833 493 PANTHER RAN BINDING PROTEIN 29 476 IPR045255 -
Lele42g0833 493 SMART ranbd_3 349 472 IPR000156 GO:0046907
Lele42g0833 493 Gene3D - 288 472 IPR011993 -
Lele42g0833 493 MobiDBLite consensus disorder prediction 35 53 - -
Lele42g0833 493 Coils Coil 158 178 - -
Lele42g0833 493 MobiDBLite consensus disorder prediction 101 256 - -
Lele42g0833 493 MobiDBLite consensus disorder prediction 55 70 - -
Lele42g0833 493 SUPERFAMILY PH domain-like 350 473 - -
Lele42g0833 493 MobiDBLite consensus disorder prediction 1 273 - -
Lele42g0833 493 CDD RanBD_NUP50_plant 359 474 IPR045207 -
Lele42g0833 493 Pfam NUP50 (Nucleoporin 50 kDa) 13 73 IPR015007 GO:0005643
Lele42g0833 493 Pfam RanBP1 domain 357 469 IPR000156 GO:0046907
Lele42g0833 493 MobiDBLite consensus disorder prediction 257 273 - -
Lele42g0833 493 ProSiteProfiles Ran binding domain type 1 profile. 350 469 IPR000156 GO:0046907
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0833 Lele-ChrLele42 21232359 21233840 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0833 42 21232359 21233840 Lele43g0549 43 4959059 4960552 hybridization
Lele42g0833 42 21232359 21233840 Lele44g0512 44 3946590 3948068 hybridization