Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0984 ATGGGTGCTTCTCTGCCCCCCAAGGAGGTCAACCTCTTCAAGCTTATTGTTAAATCATATGAAACAAAACAATACAAAAAGGGACTCAAAGCAGCTGATGCTATTCTGAAAAAATTTCCGGACCATGGAGAAACTTTATCAATGAAGGGTTTGACATTGAATTGCATGGATCGTAAGTCTGAAGCATATGAACTTGTTCGTCAAGGACTAAAGAATGACCTCAAAAGTCATGTTTGCTGGCATGTTTATGGTCTTCTTTATCGGTCAGACAGAGAATATAGGGAGGCCATTAAGTGCTACCGTAATGCATTGAAAATAGATCCTGACAATATTGAAATCTTACGTGACCTATCGCTTTTACAGGCTCAGATGCGAGATTTAACAGGTTTTGTTGAGACAAGACAAAAACTTCTGACTCTTAAACCAAATCATCGCATGAACTGGATTGGCTTTGCAGTTTCCCATCATTTGAATTCTAAGTATGGCTCGGATCATAATTGTTTTTCTGAAAGTGCGTCCAAAGCAGTTGAAATTCTGGAAGCATATGAAGGTACCTTAGAAGATGATTATCCTCCTGAAAACGAATGGTGTGAGCATGGGGAAATGCTTTTATACAAGATCTCTTTGTTAGAGGAAAGTGGATGTCTCGAGAGAGCTCTTGAGGAGTTGCACAAAAAAGAATCGAAAATTGTTGATAAACTCGCATATAAAGAACAAGAGGTTTCTCTTATCGTGAAGCTTGGTCGCTTGAAAGAGGGTGAAAAATTGTATCAGGCACTTTTGTTCCTGAATCCTGACAATTATAGATACTATGAAGGACTCCAAAAATGTGTGGGGTTATATTCAAAAGATGGCCAGTATGCTCCAGATGAAATAGATCGGCTGGATGCTCTGTACAAATCGCTTGAGCAGCAGTATAAATGGTCTTCTGCTGTGAAGGGAGTTCCGTCGCTGTTCTCTGATCTTTCTTCTCTGTACAATCATCCTGGGAAGGCAGATATTTTGGAGCAACTCATTCTTGAGTTAGAGCATTCAATTAGGACAACTGGTCAATACCCTGGACGAGTGGACAAAGAGCCCCCTTCAACTCTGATGTGGACTTTGTTCTTATTGGCTCAGCATTATGACAGACAGGGCCATTATGAACTTGCTCTTTCTCGAATTGATGAAGCTATAAAGCAAACAACTACTGTCATTGATCTATATTCTGTCAAGAGTAGGATACTGAAGCATGCTGGTGATTTGGCTGCTGCTGCTGCACTTGCAGATGAAGCTAGGTGTATGGATCTTGCTGATCGATATGTCAATAGTGAATGTGTTAAGCGCATGTTACAGGCTGATCAGGTGTCTATGGCAGAAAAAACTGCAGTCTTGTTCACAAAAGATGGGGACCAACACAACAACCTCCATGACATGCAGTGCATGTGGTATGAGCTGGCATCTGGTGAAAGTTATTTTCGCCAAGGTGATCTTGGCCGGGCTCTGAAGAAATATTTAGCTGTACAAAAGCATTATGCAGATATTACTGAAGATCAATTTGATTTCCATTCATACTGCTTAAGGAAAATGACTTTGCGAACTTATGTGGAGATGCTTAGATTACAAGATCGATTGCACTCACATGCATATTTTCACAAAGCAGCTGCTGGAGCAATCAGATGTTACCTGAAATTGTATGATTCTCCTTTGAAGTCTACAACTGAGGAGAAGGATGACATGTCAAAATTGCTTCCTTCTCAGAAAAAGAAATTGAGGCAAAAACAGAGAAAGGCTGAAGCACGGGCTAAGAAAGAGGCAGAGGAGAAGAATGGAGAGTCAAATGCCAGCAGTGCATCGAAGTCTGGAAAACGGCATGTGAAACCTGTTGATCCAGATCCACGTGGTGAAAAGTTGTTGCAGGTTGAAGATCCACTATTAGAAGCCACAAAATATCTGAAGTTGCTGCTGAAGAATTCACCTGATTCATTGGAGACACATTGGCTCTCGTTTGAATTGTATATCAGAAAACAGAAGATTTTGCTTGCCTTTCAGGCTGTAAAGCAGTTATTGAGATTGGATGCTGAGCACCCTGATTCTCATCGTTGCTTGATTAAATTCTTTCATAAAGTGGGATCCATGAATGTTGCTGTGACTGACGGCGAGAAACTCATTTGGAGTGTCTTAGAAGCTGAACGCCCAACAATTAGGTTTTCCAACATTTCTTCTTATACCAATTCCCTTTTTCAGTTGCATGAGAAGTCCCTGCTTGAGGCAAACATCTCTTTCCTTGAAAAACATAAAGATTCTTTGATGCACAGAGCCGCTGCTGCTGAAATGTTGTGCACCTTGGATCCCAACAGAAAATCTGAAGCTGTCAAGTTGATTGAAGAGTCACCGAGTGACCATGCGCCAAGAGTATTCTTGAATCTGGTGACATCTGGTTCTGCAAGAAATGGAGTGGTTGGAGCAATCAGGGAATGGAAACTCAAAGATTGCATTGCTGTTGATAAACTTCTAGAGAATGTCCTTGTTGAGCCAGATGCTGCATCGAGATTGAAAGTGCGTTGTAAAGAGCGTTTTCCTTATTCTGCATACTTTGAGGGCAGCCGCAGTTCTGTTTCTCCCAACTCGGCCTTTAATCAGATATGTACTAACTTCAAAAATGGGAGTATTAACCATTCAATGGGTGGCCAAAATGTGGATTCCTTCAAATCAAATGGGAAACTAGACGCATTCAAAGACCTCTCCATATCACAAAGTTGA 2742 0.411 MGASLPPKEVNLFKLIVKSYETKQYKKGLKAADAILKKFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLTGFVETRQKLLTLKPNHRMNWIGFAVSHHLNSKYGSDHNCFSESASKAVEILEAYEGTLEDDYPPENEWCEHGEMLLYKISLLEESGCLERALEELHKKESKIVDKLAYKEQEVSLIVKLGRLKEGEKLYQALLFLNPDNYRYYEGLQKCVGLYSKDGQYAPDEIDRLDALYKSLEQQYKWSSAVKGVPSLFSDLSSLYNHPGKADILEQLILELEHSIRTTGQYPGRVDKEPPSTLMWTLFLLAQHYDRQGHYELALSRIDEAIKQTTTVIDLYSVKSRILKHAGDLAAAAALADEARCMDLADRYVNSECVKRMLQADQVSMAEKTAVLFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKYLAVQKHYADITEDQFDFHSYCLRKMTLRTYVEMLRLQDRLHSHAYFHKAAAGAIRCYLKLYDSPLKSTTEEKDDMSKLLPSQKKKLRQKQRKAEARAKKEAEEKNGESNASSASKSGKRHVKPVDPDPRGEKLLQVEDPLLEATKYLKLLLKNSPDSLETHWLSFELYIRKQKILLAFQAVKQLLRLDAEHPDSHRCLIKFFHKVGSMNVAVTDGEKLIWSVLEAERPTIRFSNISSYTNSLFQLHEKSLLEANISFLEKHKDSLMHRAAAAEMLCTLDPNRKSEAVKLIEESPSDHAPRVFLNLVTSGSARNGVVGAIREWKLKDCIAVDKLLENVLVEPDAASRLKVRCKERFPYSAYFEGSRSSVSPNSAFNQICTNFKNGSINHSMGGQNVDSFKSNGKLDAFKDLSISQS 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0984 913 SUPERFAMILY TPR-like 369 710 IPR011990 GO:0005515
Lele39g0984 913 MobiDBLite consensus disorder prediction 569 631 - -
Lele39g0984 913 MobiDBLite consensus disorder prediction 616 631 - -
Lele39g0984 913 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 313 834 - -
Lele39g0984 913 PIRSF NAT_A 311 799 IPR021183 -
Lele39g0984 913 PIRSF NAT_A 1 313 IPR021183 -
Lele39g0984 913 FunFam N-terminal acetyltransferase catalytic subunit (NAT1) 490 710 - -
Lele39g0984 913 SMART tpr_5 365 398 IPR019734 GO:0005515
Lele39g0984 913 SMART tpr_5 43 76 IPR019734 GO:0005515
Lele39g0984 913 SMART tpr_5 77 110 IPR019734 GO:0005515
Lele39g0984 913 SMART tpr_5 475 508 IPR019734 GO:0005515
Lele39g0984 913 Pfam N-terminal acetyltransferase A, auxiliary subunit 313 681 IPR021183 -
Lele39g0984 913 Gene3D - 490 711 - -
Lele39g0984 913 Gene3D - 2 311 - -
Lele39g0984 913 Gene3D - 312 488 - -
Lele39g0984 913 SUPERFAMILY TPR-like 18 161 IPR011990 GO:0005515
Lele39g0984 913 Coils Coil 581 605 - -
Lele39g0984 913 Pfam TPR repeat 84 123 - -
Lele39g0984 913 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0984 Lele-ChrLele39 18662010 18675910 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0549 43 4959059 4960552 Lele39g0984 39 18662010 18675910 CCT
Lele44g0512 44 3946590 3948068 Lele39g0984 39 18662010 18675910 CCT
Lele39g0984 39 18662010 18675910 Lele39g0984 39 18662010 18675910 ECH
Lele37g0444 37 3632290 3643984 Lele39g0984 39 18662010 18675910 hybridization
Lele38g0411 38 3295877 3301752 Lele39g0984 39 18662010 18675910 hybridization