Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0605 ATGCGCAAGACACCGACGGGACGGCGATTCGGATTCCTCTTCTTCCTCAAATTCGTTCCTAGCAGGAGAATTAAGAATATGAAAAAGAGGAAGATGGATTACGTAGTGAATTTTGTGCTTCTTTCCAATTCCGTTTTTCAAGTTCTTCTCTGTGTGTTAAACAGTGGGGTCCAGGACAAGTGCGTGTTTCTTCATAGCTTGTCTCGTTGGGCCATGGACTTTGAATCAAGCTACGATATTTCCGCCACTGCCGACTTCATTCACAGCCGCAACTTCACCAGAGTTGCTTTGCAATTTCCAGATAATCTCTTAAAAGATTCAACGAAAGTGGTTGCATCATTAAGCCAATGTCTTCAATCACTTGGACAAATTGATGTCACAGGAAGTGTGAATACGACAGATGTAGGGTTGTACGTGATGGCAGACACAACGTATGGCAGTTGCTGTGTTGATGAAGTTGCAGCATTACACATCAATGCTGATTGTGTCATTCATTATGGGCAGACATGTTTTAGCCCGACAACAACTCTACCTGCTTTCTTTGTTTTTGGGAAGGCTTCTATTAGCATAGCTAACTGTGTTGAAAGTCTGTCGAAACATGCTCTTTCATGTAGCAAACCTATCATGGTCCTTTTTGGGTTGGAATACGCACATTCAATACAACACATTAAAACAGCAATGTTAGAAGCATTAATGTCTAGTAGATCTGAGTTGAAATCAGAAGTTCATTTTGCCGATGTTCCATCTTCTTCTATGTTTCCATCAAAAGATATCAAAAACTTAAATGGGTTGCAGGAATCAGCTGATGGTTTGCCCAATAATGTCAGTTCTAATGAGACTAGTGGACCTAGGTATAGCAATGGAGGATTGACTTGGAAATTTCCCGAGGGAAAAAGCATGGATGACTTCTCAATCTTTTGGATTGGACTCGATAATTCTGCATTTGCAAATGTTGTTCTCACATTCAATGCCTGTGAAATAGTCAGATATGATACAACTGAGAACCGGATGGTGACTGACATGTCTCAGCAGAGGAGGATTCTTAAACGTAGATATTACCTAGTCGAGAGGGCTAAAGATGCAAATATCATTGGTATTTTGGTAGGAACTCTAGGCGTAGCTGGTTATCTCCACATGATACACCAGATGAAAGAACTCATTACTGGGGCAGGAAAGAAGGCCTATACTTTGGTCATGGGAAGACCAAACCCAGCTAAACTTGCTAACTTTCCCGAGTGTGATGTTTTCATTTTTGTCTCCTGTGCTCAAACTGCTCTACTGGATAGCAAAGAGTATCTAGCCCCAGTTATTACTCCATTTGAAGCAACAATAGCTTTCAGCAGGGGAAGCCAATGGACAGGATCATATCTTATGGAATTTCGAGATCTGATAGAATTGCCTCAAGTGGAATCTGGAAACCAGGAAGAAGCACGGTTTTCATTCCTTCAGGGTGGATATGTCGAAGATACTGATAACCATGAAAACTCCAAGGACGATCAGGAAGCCCTTGCTTTAGTTAATGCTACAGAGAAGGCTTTGCAATTGCGGGATAACTGCGGTTCTCTAATTAAAAGGGATGCTAAATCAGGAGCAGAGTTTTTCGCCACAAGATCTTATCAGGGTCTGAATATTGACGATGAAAATGCCGTGCCCGAGCCATATTTCATAGGAAGGAAAGGAAGGGCGTCAGGCTATGAAGACGAGAAAAGGCAACAATAA 1719 0.4177 MRKTPTGRRFGFLFFLKFVPSRRIKNMKKRKMDYVVNFVLLSNSVFQVLLCVLNSGVQDKCVFLHSLSRWAMDFESSYDISATADFIHSRNFTRVALQFPDNLLKDSTKVVASLSQCLQSLGQIDVTGSVNTTDVGLYVMADTTYGSCCVDEVAALHINADCVIHYGQTCFSPTTTLPAFFVFGKASISIANCVESLSKHALSCSKPIMVLFGLEYAHSIQHIKTAMLEALMSSRSELKSEVHFADVPSSSMFPSKDIKNLNGLQESADGLPNNVSSNETSGPRYSNGGLTWKFPEGKSMDDFSIFWIGLDNSAFANVVLTFNACEIVRYDTTENRMVTDMSQQRRILKRRYYLVERAKDANIIGILVGTLGVAGYLHMIHQMKELITGAGKKAYTLVMGRPNPAKLANFPECDVFIFVSCAQTALLDSKEYLAPVITPFEATIAFSRGSQWTGSYLMEFRDLIELPQVESGNQEEARFSFLQGGYVEDTDNHENSKDDQEALALVNATEKALQLRDNCGSLIKRDAKSGAEFFATRSYQGLNIDDENAVPEPYFIGRKGRASGYEDEKRQQ 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0605 572 Pfam Putative diphthamide synthesis protein 99 456 IPR016435 GO:0017183|GO:0090560
Lele43g0605 572 PANTHER DIPHTHAMIDE BIOSYNTHESIS PROTEIN 67 568 IPR016435 GO:0017183|GO:0090560
Lele43g0605 572 FunFam 2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 344 446 - -
Lele43g0605 572 Gene3D Diphthamide synthesis DPH1/DPH2 domain 3 344 446 IPR042265 -
Lele43g0605 572 SFLD Radical SAM 3-amino-3-carboxypropyl Radical Forming 73 571 IPR016435 GO:0017183|GO:0090560
Lele43g0605 572 SFLD Diphthamide biosynthesis 72 570 - -
Lele43g0605 572 TIGRFAM DPH2: diphthamide biosynthesis protein 2 73 566 IPR010014 GO:0017183
Lele43g0605 572 Gene3D Diphthamide synthesis DPH1/DPH2 domain 1 80 187 IPR042263 -
Lele43g0605 572 TIGRFAM diphth2_R: diphthamide biosynthesis enzyme Dph1/Dph2 domain 77 446 IPR016435 GO:0017183|GO:0090560
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0605 Lele-ChrLele43 5404211 5410412 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0605 43 5404211 5410412 Lele37g0501 37 4092566 4094507 CCT
Lele43g0605 43 5404211 5410412 Lele38g0470 38 3793219 3795004 CCT
Lele43g0605 43 5404211 5410412 Lele39g0924 39 18182903 18184375 CCT
Lele43g0605 43 5404211 5410412 Lele40g0441 40 3650330 3651327 CCT
Lele41g0795 41 17714831 17718471 Lele43g0605 43 5404211 5410412 hybridization
Lele42g0781 42 20791106 20795251 Lele43g0605 43 5404211 5410412 hybridization