Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0549 ATGGGGGATGCTGACAATGCCCTTCCACCTTCAAAGAAAAGGGCTGCTGGAAGGGAACTCTCTCGAGACACTCCCCTTGATGATGAGGAAGATGCCCCAGAACCTGAGGCTGGAACTTTTAAGAAAGCCAGTGATGAAGTTATGGCATCCAGGAGAGTAGTTAAAGTTCGTCGCCAACAGAGCAATTATTCTCCATCTACAAATCCTTTTGCTGGAATACGTTTGGTTTCTCCTCCTGAGTCGAGTGCTAAACCTGCAGAAGCTACCCCTGTAGCACAAACAACTAGTGAGAACACTATTGCAGCTGATACAAAATGTACTGATGATGTAACCAATGATTCTGAGAAAGCTAAAGATGGGGACGGCAAACAATTAGAGAGCAAAGCTGATGAGTTGGGAAATAAATCTGCTGAAGTTAAGGATGCTGTTGATGGAGAGAAAACTGGAGAGGAGAGCGCGGGTGAAAAATCTGAGGTAGGCAAACAACAAAGAGAGGATCATGATAGAAATGAGGATAAGAAGGAAGCTGAAGATAAGGAGACTGCTGACGAGGGTTATAAAGAACAAACTAATACAATTGATAATGAGGATAAGGAAGATGCAGAAGGTAAAAAGAGTGTTGGTGAGGTGGATAAAGAACAAACTAGTAAAAGTGATAATGAGGATAAGAAGGATGCTGAAGATAAAGAGAATGCTGGTGAGGTGGAAAAGGAACAAACTAAGGATGAAAATGATACAGTAAATGATGATCAGAAAGAGGACGTGGGTGAAAGTCACGAGCCTAGTTCAGAAGGATCTTCTTTGAAGTCATTTCAACAGCTTTCAAGCAGCCAAAATGCATTTAGTGGTCTTGCTGGAACTGGATTTTCTGCTTCCTCATTTACCTTTGGGTCTTTATCAAATGAAGGGTCTGCTTTAGGCAGTGGTTCTGGATCAATTTTTGGAATGAAAAATGATAAGCCTTTTGGTCTGGGTTTATCTAACAATGGAACTTCTGTTTTTGGGGCAACTGGTGTCTCCACTGCTGCTAAAGGTGAGGGAAGTGGTTTCCCAACGATGCAGGAGGTCGTAGTTGAGACGGGCGAGGAAAATGAGAAAGTGGTTTTCAATGCAGATTCAATATTATTCGAATTTGTTGAGGGAAGTTGGAAGGAACGAGGGAAAGGTGAACTGAAGGTCAATGTTTCTACGGGAGGGAACGAAAAGGCCAGACTTCTTATGAGGACGAGGGGAAATTACAGGCTGATATTAAATGCACGTCTGTTCCCTGATATAAAGTTCACCAATATGGAGAAGAAAGGTGTTACTTTTGCCTGCATCAATAGTGCCAATGAAGGGAAGGATGGCCTCTCAACATTCGCCTTGAAATTCAAAGATGGGTCGATAGTAGAGGAATTTAAAGCGGCGGTCATGGCGGTCGTGGCTCATAAGGGCGAGAAAGCAGCGACAGTTCTCAATACCCCAGAAAATTCCCCCAAGGCTTCAGATGGTTAA 1494 0.4317 MGDADNALPPSKKRAAGRELSRDTPLDDEEDAPEPEAGTFKKASDEVMASRRVVKVRRQQSNYSPSTNPFAGIRLVSPPESSAKPAEATPVAQTTSENTIAADTKCTDDVTNDSEKAKDGDGKQLESKADELGNKSAEVKDAVDGEKTGEESAGEKSEVGKQQREDHDRNEDKKEAEDKETADEGYKEQTNTIDNEDKEDAEGKKSVGEVDKEQTSKSDNEDKKDAEDKENAGEVEKEQTKDENDTVNDDQKEDVGESHEPSSEGSSLKSFQQLSSSQNAFSGLAGTGFSASSFTFGSLSNEGSALGSGSGSIFGMKNDKPFGLGLSNNGTSVFGATGVSTAAKGEGSGFPTMQEVVVETGEENEKVVFNADSILFEFVEGSWKERGKGELKVNVSTGGNEKARLLMRTRGNYRLILNARLFPDIKFTNMEKKGVTFACINSANEGKDGLSTFALKFKDGSIVEEFKAAVMAVVAHKGEKAATVLNTPENSPKASDG 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0549 497 Pfam RanBP1 domain 358 470 IPR000156 GO:0046907
Lele43g0549 497 MobiDBLite consensus disorder prediction 35 53 - -
Lele43g0549 497 MobiDBLite consensus disorder prediction 55 71 - -
Lele43g0549 497 Pfam NUP50 (Nucleoporin 50 kDa) 13 73 IPR015007 GO:0005643
Lele43g0549 497 Coils Coil 223 243 - -
Lele43g0549 497 MobiDBLite consensus disorder prediction 108 260 - -
Lele43g0549 497 MobiDBLite consensus disorder prediction 87 107 - -
Lele43g0549 497 SUPERFAMILY PH domain-like 351 473 - -
Lele43g0549 497 PANTHER RAN BINDING PROTEIN 28 481 IPR045255 -
Lele43g0549 497 CDD RanBD_NUP50_plant 360 478 IPR045207 -
Lele43g0549 497 ProSiteProfiles Ran binding domain type 1 profile. 351 470 IPR000156 GO:0046907
Lele43g0549 497 Gene3D - 289 474 IPR011993 -
Lele43g0549 497 MobiDBLite consensus disorder prediction 1 272 - -
Lele43g0549 497 SMART ranbd_3 350 473 IPR000156 GO:0046907
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0549 Lele-ChrLele43 4959059 4960552 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0549 43 4959059 4960552 Lele37g0444 37 3632290 3643984 CCT
Lele43g0549 43 4959059 4960552 Lele38g0411 38 3295877 3301752 CCT
Lele43g0549 43 4959059 4960552 Lele39g0984 39 18662010 18675910 CCT
Lele43g0549 43 4959059 4960552 Lele40g0389 40 3141582 3155886 CCT
Lele41g0843 41 18138221 18139573 Lele43g0549 43 4959059 4960552 hybridization
Lele42g0833 42 21232359 21233840 Lele43g0549 43 4959059 4960552 hybridization