Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0538 ATGCCGACGTACAAGATTCGGGGAATCGATGTAGAATTCCCATTCGAGGCCTATGATTGTCAGCTTGTTTACATGGAGAAAGTCATACAATCACTTCAGGAGCAATGTAATGCACTGTTGGAGAGTCCCACAGGAACTGGCAAAACACTTTGTCTTCTATGTGCCACATTAGCCTGGCGGAAGAGTTTGGGCAGTTTCTCAACTGGTGCAAATGTTAAGACCACTAAGAATTCTGGGGGCAATGTAGACATTTCATCTTCACAACCTGAGGCTTCAAAGCTTCCTACTATTATATATGCTTCACGCACTCACAGCCAGATCCGCCAAGTAATTCAAGAGTTGAAGAGAACATCATACAGGCCGGTTTCTGTTCATGTAGAGTGTTCAGTGTTGTCAAGGAAGTATGTTCTATTCTCTAAACCTTTTCCGGGAATTAAGAACTTGTTTGACATAAACGGTTTTGCTGACATGCCCAAAATGGTTGTTCTAGGATCTCGGGAGCAACTGTGCATTCATGATCAGGTGAGTCTACTTCAGGGAAGGACACAAACAAATGCTTGCCAGTTACTCTGCCGAAGGCATGGCAAGAATGGGAAACGTCGATGTAACCATAACGATCTTGTCCTTGAATACTCGAAGAGAAACCCCCATCTTGGAGAAGAACCTATAGATATTGAGGATTTGGTGAATATTGGGAAAAGATTTGGGCCGTGTCCTTACTACTTATCAAAAGAGCTCCACAAGGCTGCTGATATAGTGTTTGCACCATACAACTATCTTATTGATCGTGGGAATAGAAAATCTCTGAATATTTCTTGGAATGATAGCATACTCATATTTGATGAAGCTCACAACCTGGAAAGCTTATGTGCTGATGCTGCCTCTTTTGACTTGGCTTCTTGGCTTCTAACAGCTTGCATTTCTGAGGCTCAAAGTTGTGTTGATCTTTGTATAGATAGAAGAGACAAATTAAATGATAAGTCACGGAATCCAGATGATTTTGCCATCCTTAAAGCACTTCTACTAAAACTTGAAAAGCGAATTGCTGACGTACCTATTGATTCCAAGGAATTGGGATACACCAAACCTGGACCTTATATCTATGAATTTTTCTCTGACCTTAATATCACTCATAAGACAGCTTCTAAGCTTAAGCGTACAATTGAAGAAGCTGGGATCCTTCTTGAGGAAGATAGTCAGCAGAAGGCAAGTAGCACCAATTTCAGGCTGCACAATATGAGTGACATCATTGACATTGTTTTCAGGGATGAAGGCACTGCTCATGCAAAATACTATCGGGTCCATGTGAAGGAGGTTGATGCAAAAGCTACTGACAGCATTAAAGGTAAGGCTTCAAGGGTCCTTAGTTGGTGGTGCTTTAATCCAGGAATAGCCATGGAAGTTTTTCCTAAGTTGGGCGTTGGCTCTGTTATATTGACTTCTGGCACATTATCTCCCATGGAATCTTTTGCTCAGGAGCTGAAAATAGATTTTCCCATTCGTCTAGAAAATCAACATGTAATAACCCCAAATCAGATTTGGGCTGGAGTTGTACCAGTTGGCCCTTCGGGGCGTACATTTAACTCTTCCTACCGCACGCGTGATTCTATAGAGTACAAGCAGGAGCTTGGTAATACAATTGTCAATTTGGCTCGAATCGTTCCTGATGGACTTCTTGTGTTCTTCCCATCTTATTACCTTTTGGACCAATGCATTGGGTGCTGGAAAAACGTGAATAATGGAAATTCAACATCAATATGGGAGAGAATTTGCAAACATAAGAAACCTGTCATAGAACCCAGGCAATCTTCCATGTTTTCCCTATCAATTGAGGACTACATATCTAAGCTGAAAGACACCTCTGCATCTGGAGCAGTATTTTTCGCCGTTTGTCGTGGCAAGGTAAGTGAAGGATTAGATTTTGCAGACCATGCTGGAAGAGCTGTGATGATCATTGGCATGCCATTTGCCACAAGTAATGATCCTAAGGTTCGTCTAAAGCGAGAATATTTGGATCAACAATCTCAAACCCAAGGAGAATTGTGTAAGGTTTTAACTGGAGAAGAGTGGTATAATCAGCAAGCTTCACGTGCAGTGAATCAAGCTGTTGGACGTGTAATCCGTCACCGCCATGACTATGGAGCAATTATCCTTTGCGATGAAAGATTTGCACATCGACATCGTCAATCTCAAGTCTCACGTTGGATACAGCCTCACATCAAGTGTTTCTCAAAATTTGGAGAAGTAGTTTTCACTTTAACTCGATTTTTCCGTGATGGAGGAAGTCGCGGCCCTACAAAGCTGTCATTATTAGAAGCTGGAAATGGGGGTCAGTATGGTCTGGCACTGTGTTCTTTATCTTTTCCTTGTTTGTGGCCTCTCTGTCCCACACTTCTTTGGAATTTTGCAGAAAAGACATCAGAGCCTGGCCTGGGCAAATTTGGCCTGGAAAAACTCGTCTCTCCTACTACGTCAGCGACTCAAAATTTCTCTCCGAAACCATTGCCTTCACTTGGTGTTAAAGAAGGCCATGTTCCGAATCTTGGGGAAATTATGCCTGCTAATCGTGCTTCTCTGGCTTTTAACAATTGCAAGAATATAGGCTGTAAGAATTCAAGAGACATATGTAATGATATTTCACATGGGAGGGAGATTCCATCAGGAGTCGCTGAAGTAATTGATTTGGCTGGTGGTGCTCAACATGCCGTAAAACTAAAGGATATACACACAGCACCTTTGGCCAAGAAGCGTAGATTTATAAGTGGAGAGTACGACTTAATGCAACATAGCGAACGTTCCGATCAGCATACGCTTGTCCGTCAGAATGCTCAAAGTGGTGTGGAACTCTTACATAAAGATAATGGGGCCTCCCAAAGGCACGATTTCCAACATCTTACACAAAAAGATAATCGTCCTCCAGATTCTGGACCTCCTGTAGATGAGGAAACCCGGGGATTGGCGTTCCTTGTTCAGGTTAGGGAGAAGCTCAGTGGTGCAGAGTATAAAGACTTTGTGAGCTATATGAAGGCTCTCAAGACCAAAGACATGATGACTAGTGAAGTTTTGCGGTCCATATGCAGGTTGTTCGCTGGACCAGAGAGGCAACCGCTTCTTAAAAGGTTCAAGGATTACATTCCTGCAAAATATCATTCTTTGTATGAGCAGTATGTTGAAGAAAACAACTACACACTTGTCAGCTGA 3201 0.4249 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQEQCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTGANVKTTKNSGGNVDISSSQPEASKLPTIIYASRTHSQIRQVIQELKRTSYRPVSVHVECSVLSRKYVLFSKPFPGIKNLFDINGFADMPKMVVLGSREQLCIHDQVSLLQGRTQTNACQLLCRRHGKNGKRRCNHNDLVLEYSKRNPHLGEEPIDIEDLVNIGKRFGPCPYYLSKELHKAADIVFAPYNYLIDRGNRKSLNISWNDSILIFDEAHNLESLCADAASFDLASWLLTACISEAQSCVDLCIDRRDKLNDKSRNPDDFAILKALLLKLEKRIADVPIDSKELGYTKPGPYIYEFFSDLNITHKTASKLKRTIEEAGILLEEDSQQKASSTNFRLHNMSDIIDIVFRDEGTAHAKYYRVHVKEVDAKATDSIKGKASRVLSWWCFNPGIAMEVFPKLGVGSVILTSGTLSPMESFAQELKIDFPIRLENQHVITPNQIWAGVVPVGPSGRTFNSSYRTRDSIEYKQELGNTIVNLARIVPDGLLVFFPSYYLLDQCIGCWKNVNNGNSTSIWERICKHKKPVIEPRQSSMFSLSIEDYISKLKDTSASGAVFFAVCRGKVSEGLDFADHAGRAVMIIGMPFATSNDPKVRLKREYLDQQSQTQGELCKVLTGEEWYNQQASRAVNQAVGRVIRHRHDYGAIILCDERFAHRHRQSQVSRWIQPHIKCFSKFGEVVFTLTRFFRDGGSRGPTKLSLLEAGNGGQYGLALCSLSFPCLWPLCPTLLWNFAEKTSEPGLGKFGLEKLVSPTTSATQNFSPKPLPSLGVKEGHVPNLGEIMPANRASLAFNNCKNIGCKNSRDICNDISHGREIPSGVAEVIDLAGGAQHAVKLKDIHTAPLAKKRRFISGEYDLMQHSERSDQHTLVRQNAQSGVELLHKDNGASQRHDFQHLTQKDNRPPDSGPPVDEETRGLAFLVQVREKLSGAEYKDFVSYMKALKTKDMMTSEVLRSICRLFAGPERQPLLKRFKDYIPAKYHSLYEQYVEENNYTLVS 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0538 1066 Pfam Helicase C-terminal domain 547 738 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Lele43g0538 1066 CDD SF2_C_XPD 511 723 - -
Lele43g0538 1066 Gene3D - 981 1063 - -
Lele43g0538 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 718 IPR027417 -
Lele43g0538 1066 MobiDBLite consensus disorder prediction 958 978 - -
Lele43g0538 1066 Gene3D - 523 742 IPR027417 -
Lele43g0538 1066 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 6 759 IPR045028 -
Lele43g0538 1066 Gene3D - 15 324 IPR027417 -
Lele43g0538 1066 Pfam DEAD_2 99 299 IPR010614 GO:0003677|GO:0003678|GO:0005524
Lele43g0538 1066 SMART deadxpd 9 329 IPR006554 GO:0003678|GO:0016818
Lele43g0538 1066 MobiDBLite consensus disorder prediction 958 981 - -
Lele43g0538 1066 FunFam Regulator of telomere elongation helicase 1 524 742 - -
Lele43g0538 1066 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 7 340 IPR014013 GO:0005524
Lele43g0538 1066 CDD DEAHc_FancJ 37 287 - -
Lele43g0538 1066 CDD HN_RTEL1 967 1059 - -
Lele43g0538 1066 SMART Cxpdneu3 565 725 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Lele43g0538 1066 TIGRFAM rad3: DNA repair helicase (rad3) 159 749 IPR013020 GO:0003678
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0538 Lele-ChrLele43 4856979 4879030 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0538 43 4856979 4879030 Lele37g0441 37 3591172 3616036 CCT
Lele43g0538 43 4856979 4879030 Lele38g0406 38 3254495 3256589 CCT
Lele43g0538 43 4856979 4879030 Lele39g0989 39 18716405 18718692 CCT
Lele43g0538 43 4856979 4879030 Lele40g0386 40 3099977 3109795 CCT
Lele41g0853 41 18218017 18228225 Lele43g0538 43 4856979 4879030 hybridization
Lele42g0844 42 21314603 21327014 Lele43g0538 43 4856979 4879030 hybridization