Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0386 ATGCGGGGCCCACGAAGCCACCGTGGCAACAGCCTCTCAGACTCGAGATCAAGAGGAAGCTTGCGCAAAGATCAGAAAGAGGTTCTCGCAAGTTTATACTCCGGAACTGTCTGTATTTATAACTACCAGTCTCAGACGATGGCACAGTCATTTGAGGTCACTGACTTACCAGTTAGGTCAGCCAAGTTTATTGCACGCAAGCAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAAAGTATTTGAAGCACATACAGATTACATAAGGTGTGTGGCAGTTCACCCTACCCTTCCTTATGTCCTGTCATCTTCTGATGATATGCTCATAAAGCTTTGGGATTGGGAGAAAGGTTGGGTTTGTACTCAAATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACCAATACATTTGCCAGTGCATCTCTAGATCGTACCATAAAGATTTGGAATCTTGGGTCTCCTGACCCCAATTTTACATTGGATGCCCATCAGAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAGCCTTATCTGATTACTGGTTCTGATGACCACACTGCTAAGGTATGGGACTATCAGACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACGCACAATGTATCTGCTGTATGCTTTCATCCTGATCTTCCTATAATTATTACTGGTTCAGAGGATGGTACAGCGCGCATATGGCATTCAACAACTTATAGACTCGAGAACACTTTGAATTATGGTCTTGAAAGAGTTTGGGCTATTGGATACGTTAAAGCTGCAAGGGGTCTCTTTTCATTCTGCCCTCATGACATAGAACATCAAAACTTCTTCCTCCACAGGGTTGTGCTTGGCTATGATGAGGGAACTATTATGGTCAAACTGGGCCGTGAAGTGCCTGTGGCCAGCATGGACAATAGTGGGAAAATTATTTGGGCTAAGCACAATGAAATTCAGACAGTCAATATAAAGAGTGTAGGGGCAGATGTGGAGGTTGCTGATGGAGAACGATTACCTTTGGCTGTTAAGGAGCACAATCCAAATGGGAGGTTTGTTGTTGTATGTGGAGACGGTGAGTATATTATATACACCTCATTGGCATGGAGAAATAGGTCATTTGGTTCTGCACTGGAAATGGTTTGGTCTTCAGAAGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATAAAAATTTTCTCAAAAAATTTCCAGGAAAAGAAGAGTATTCGACCAACTTTTTCTGCTGAACGAATATTTGGTGGTGCCTTATTAGCAATGTGTTCAAATGATTTCATTTGCTTTTATGATTGGAGTGAATGCAGGTTAATCCGTCGTATTGATGTCAATGTGAAAAACCTCTACTGGGCTGATAGTGGTGATCTAGTGACAATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATCGTGATATAGTTTCATCATATTTGGATGGTGGAAGACCTGTTGATGAGCTAGGGGTGGAAGATGCATTTGAGCTCCTTCATGAAATAAATGAACGGGTTAGGACAGGCATCTGGGTTGGAGATTGTTTTATTTACAACAATTCCTCTTGGAGGCTTAATTACTGCGTTGGCGGTGAGGTAACTACAATGTTTCATTTGGATCGCCCTATGTACTTGTTGGGATATCTTGCTAGCCAAAGCCGGGTCTATCTGATAGACAAAGAGTTCAAGTTAGTGGACCTTTTGTTTTTGTTATTTAAAGACACAGCTAGCAGTCATACTCTTGTAATGCGTGGTGATGTGGAAAGGGCCAATGAAGTTCTTCCTTCAATTCCTAAAGAGCACCATAATAGTGTGGCTCATTTCCTGGAATCACGAGGGATGATAGAGGATGCTCTTGAAGTAGCAACTGATCCTGACTACAGATTTGAGTTAGCCATGCAGCTTGGGAGACTGGAGGTGGCAAAGAGTATTGCAACAGAAGTGCAAAGTGAGTCTAAATGGAAGCTGTTGGGAGAATTGTCTATGTCTACTGGAAAGTTAGAAATGGCTGAAGAATGTTTAAAGAATGCAATGGATTTGAGTGGATTGTTACTGCTATATTCTTCTTTAGGAGATGCTGAGGGAATATTGAATCTTGCAACCCTTGCTAAAGAGCAAGGGAAGAACAATGTCGCATTCCTATGCATGTTCATGTTGGGTAAACTTGAAGATTGCCTTCAACTGTTGATAGAGAGCAATCGGATTCCTGAAGCTGCTTTAATGGCACGGTCTTATCTCCCAAGCAAGATCTCGGAGATAGTAGCAATTTGGAGAAAAGATCTCCATAAGGTTAGCCCCAAAGCTGCTGAGTCATTGGCTGATCCTGAGGAGTATCCTAATTTGTTTGAAGATTGGCAAGTTGCAGTTGCTGTTGAATCCAAAGCTGCAGAGACGAGGGGTGTTTACCCTCCGGCAGAGGAGTATGCCCAGCATGCTGGAAAGTCATATGTTACCCTTGTCGACGCTTTCAGAAACATGCAGATTGAAGAAGAGGAGGAGCTTCTAGAGAATGGAGAGTCTAATCATGAGTTGATTGAACAGAATGAAGAAGAGCTCAACGCAGAGGATAAGCAGGAGGAACAGAATGGAGAGGAGGCAGTTGTGGTGGATGCTGATTCTACAGATGGTGCAGTACTTGTTAACGGCAACGAGGCTGAGGAAGAGTGGGGTACGAATAACGAAGGAGCCCCGTCAACCTAA 2769 0.4247 MRGPRSHRGNSLSDSRSRGSLRKDQKEVLASLYSGTVCIYNYQSQTMAQSFEVTDLPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPDLPIIITGSEDGTARIWHSTTYRLENTLNYGLERVWAIGYVKAARGLFSFCPHDIEHQNFFLHRVVLGYDEGTIMVKLGREVPVASMDNSGKIIWAKHNEIQTVNIKSVGADVEVADGERLPLAVKEHNPNGRFVVVCGDGEYIIYTSLAWRNRSFGSALEMVWSSEGEYAVRESTSKIKIFSKNFQEKKSIRPTFSAERIFGGALLAMCSNDFICFYDWSECRLIRRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDIVSSYLDGGRPVDELGVEDAFELLHEINERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFKLVDLLFLLFKDTASSHTLVMRGDVERANEVLPSIPKEHHNSVAHFLESRGMIEDALEVATDPDYRFELAMQLGRLEVAKSIATEVQSESKWKLLGELSMSTGKLEMAEECLKNAMDLSGLLLLYSSLGDAEGILNLATLAKEQGKNNVAFLCMFMLGKLEDCLQLLIESNRIPEAALMARSYLPSKISEIVAIWRKDLHKVSPKAAESLADPEEYPNLFEDWQVAVAVESKAAETRGVYPPAEEYAQHAGKSYVTLVDAFRNMQIEEEEELLENGESNHELIEQNEEELNAEDKQEEQNGEEAVVVDADSTDGAVLVNGNEAEEEWGTNNEGAPST 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0386 922 Gene3D - 601 804 - -
Lele40g0386 922 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 223 254 - -
Lele40g0386 922 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 222 IPR001680 GO:0005515
Lele40g0386 922 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 264 IPR001680 GO:0005515
Lele40g0386 922 SUPERFAMILY C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 196 471 IPR011048 -
Lele40g0386 922 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 179 216 - -
Lele40g0386 922 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 93 125 - -
Lele40g0386 922 SUPERFAMILY WD40 repeat-like 24 278 IPR036322 GO:0005515
Lele40g0386 922 PANTHER COATOMER 25 329 - -
Lele40g0386 922 FunFam Coatomer subunit beta 599 804 - -
Lele40g0386 922 MobiDBLite consensus disorder prediction 7 23 - -
Lele40g0386 922 PIRSF Beta'-COP 20 892 IPR016453 -
Lele40g0386 922 CDD WD40 24 286 - -
Lele40g0386 922 MobiDBLite consensus disorder prediction 1 23 - -
Lele40g0386 922 MobiDBLite consensus disorder prediction 873 922 - -
Lele40g0386 922 SMART WD40_4 172 213 IPR001680 GO:0005515
Lele40g0386 922 SMART WD40_4 44 83 IPR001680 GO:0005515
Lele40g0386 922 SMART WD40_4 129 169 IPR001680 GO:0005515
Lele40g0386 922 SMART WD40_4 86 125 IPR001680 GO:0005515
Lele40g0386 922 SMART WD40_4 216 255 IPR001680 GO:0005515
Lele40g0386 922 Gene3D - 13 291 IPR015943 GO:0005515
Lele40g0386 922 PRINTS G protein beta WD-40 repeat signature 156 170 IPR020472 -
Lele40g0386 922 PRINTS G protein beta WD-40 repeat signature 242 256 IPR020472 -
Lele40g0386 922 PRINTS G protein beta WD-40 repeat signature 200 214 IPR020472 -
Lele40g0386 922 FunFam Coatomer subunit beta 12 316 - -
Lele40g0386 922 ProSiteProfiles Trp-Asp (WD) repeats profile. 93 125 IPR001680 GO:0005515
Lele40g0386 922 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 136 170 - -
Lele40g0386 922 ProSiteProfiles Trp-Asp (WD) repeats profile. 136 178 IPR001680 GO:0005515
Lele40g0386 922 Pfam WD domain, G-beta repeat 175 213 IPR001680 GO:0005515
Lele40g0386 922 Pfam WD domain, G-beta repeat 218 254 IPR001680 GO:0005515
Lele40g0386 922 Pfam WD domain, G-beta repeat 131 169 IPR001680 GO:0005515
Lele40g0386 922 Pfam WD domain, G-beta repeat 89 125 IPR001680 GO:0005515
Lele40g0386 922 Coils Coil 851 885 - -
Lele40g0386 922 Pfam Coatomer WD associated region 364 769 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0386 Lele-ChrLele40 3099977 3109795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0386 64 261 Miscellaneous Gene Families AT5G08390 27.500 5.59e-18 87.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0538 43 4856979 4879030 Lele40g0386 40 3099977 3109795 CCT
Lele44g0503 44 3857432 3871539 Lele40g0386 40 3099977 3109795 CCT
Lele41g0852 41 18207492 18211294 Lele40g0386 40 3099977 3109795 CCT
Lele42g0843 42 21305748 21309580 Lele40g0386 40 3099977 3109795 CCT
Lele40g0386 40 3099977 3109795 Lele40g0386 40 3099977 3109795 ECH
Lele37g0441 37 3591172 3616036 Lele40g0386 40 3099977 3109795 hybridization
Lele38g0406 38 3254495 3256589 Lele40g0386 40 3099977 3109795 hybridization