Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0441 ATGCCTCTCAGACTCGAGATCAAGAGAAAGCTTGCGCAAAGATCAGAAAGAGTAAAATCCGTGGATCTACATCCAACAGAACCATGGGTTCTCGCAAGTTTATACTCAGGAACTGTCTGTATTTATAACTACCAGTCTCAGACCATGTCAAAGTCATTTGAGGTCACTGAGTTACCAGTTAGGTCAGCCAAGTTTATTGCACGCAAGCAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAAAGTATTTGAAGCACATACTGATTACATAAGGTGTGTGGCAGTTCACCCTACCCTTCCTTATGTCCTGTCATCTTCAGATGATATGCTCATAAAGCTTTGGGATTGGGAGAAAGGTTGGGTTTGTACTCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACCAATACATTTGCCAGCGCATCTCTAGATCGCACCATAAAGATTTGGAATCTTGGGTCTCCTGACCCTAATTTTACATTGGATGCCCATCAGAAAGGTGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAGCCGTATCTGATTACTGGTTCTGATGATCACACAGCTAAGGTATGGGACTATCAGACCAAAAGTTGTGTCCAGACTCTAGAAGGGCACACGCACAATGTATCTGCTGTATGCTTTCATCCTGATCTTCCTATAATTATTACTGGTTCAGAGGATGGTACAGTGCGCATATGGCATTCAACAACTTATAGACTCGAGAACACATTGAATTATGGTCTTGAAAGAGTTTGGGCTATTGGATATGTTAAAGGTTCTCGTCGGGTTGTGCTTGGCTATGATGAGGGATCCATTATGGTCAAACTGGGCCGCGAAGTACCTGTGGCCAGCATGGACAATAGTGGGAAAATTATTTGGGCTAAGCACAATGAAATTCAGACAGCCAATATAAAAAGTGTAGGGACGGATGTGGAGGTTGCTGATGGAGAAAGATTACCTTTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTACCCACAAAGTTTAAGGCACAATCCAAATGGGAGGTTTGTTGTTGTATGTGGAGATGGTGAGTATATTATATACACTTCATTGGCATGGAGAAATAGGTCATTTGGTTCTGCACTGGAAATGGTTTGGTCTTCAGACGGAGAATATGCTGTCAGAGAAAGTACGTCAAAGATAAAAATTTTCTCAAAAAATTTCCAGGAAAAGAAGAGTATTCGACCGACTTTTTCTGCCGAAAGAATATTTGGTGGCACCTTATTAGCAATGTGTTCAAATGATTTCATTTGCTTTTATGATTGGAGTGAATGCAGGTTAATCCGTCGCATCGATGTCAACGTGAAAAACCTCTACTGGGCTGATAGTGGTGATCTAGTGGCAGTTGCTAGTGATACATCATTCTACATTCTGAAGTACAACCGTGATATAGTTGCTTCATATATGGATGGTGGAAGAACTGTCGATGAGCTAGGGGTGGAAGATGCATTTGAGCTCCTTCATGAAATAAATGAACGGGTTAGGACAGGCATCTGGGTTGGAGATTGTTTCATTTACAACAATTCCTCTTGGAGGCTTAATTACTGTGTTGGTGGTGAGGTAACTACAATGTTTCATTTGGATCGCCCTATGTACTTGTTGGGATATCTTGCTAGCCAAAGCCGGGTCTATTTGATAGACAAAGAGTTCAACGTCATGGCATACACATTGCTTCTGAGCTTGATTGAGTACAAGACCCTTGTAATGCGTGGTGATTTGGAAAGGGCCAATGAAGTTCTACCTTCAATTCCTAAAGAGCACCAAAATAGTGTGGCACGTTTCCTGGAATCACGAGGGATGATAGAGGATGCTCTTGAAGTAGCAACTGATCCTGACTACAGATTTGAGTTAGCCATGCAGCTTGGGAGACTGGAGGTGGCAAAGAGTATTGCAACAGAAGTGCAAAGTGAGTCTAAATGGAAGCAGTTGGGAGAATTGGCTATGTCAACTGGAAAGTTAGAAATGGCTGAAGAATGTTTAAAGAATGCAATGGATTTGAGTGGATTGTTACTGCTATATTCTTCTTTAGGAGATGCTGAGGGAATATCGAATCTTGCAACCCTTGCTAAAGAGCAAGGGAAGAATAATGTCGCATTCCTATGCATGTTCATGTTGGGTAAACTTGAAGACTGCCTTCAACTGTTGGTAGAGAGCAATCGGATTCCTGAAGCTGCTTTAATGGCACGGTCTTATCTCCCAAGCAAGGTCTCGGAGATAGTAGCAATTTGGAGAAAAGATCTCCATAAGGTTAGCCCCAAAGCTGCTGAGTCATTGGCTGATCCTGAGGAGTATCCTAATTTGTTTGAAGACTGGCAAGTTGCAGTAGCTGTTGAATCCAAAGCTTCAGAGACAAGGAGTGTTTACCCTCCGGCAGAGGAGTATGCCCAGCATGCTGGAAAGTCATATGTTACCCTTGTCAACGCTTTCAGAAACATGCAGATTGAAGAAGGGGAGGAGCTTCTAGAGAATGGAGATTCTAATCATGAGTTGATTGAACAGAATGATGAAGAGCTCAATGCAGAGGATAAGCAGGAGGAACAGAATGGAGAGGATGCAGTTGTGGTGGATGCTGATTCTACAGACGGTGCAGTACTCATTAATGGCAACGAGGCTGAGGAAGAGTGGGGTACGAATAATGAAGGAGCCCCTGCTCACTCCACATCACTAGGTCTCATTAAGACAATTGGTTCCAGCTCGTGTGGATGTGAGGTTACAGTCACGGAGGCTATGTTGAGATTGTGGAGATCAATTGTTTCCCTTTTCCTGGTATTGTGGTATCTTTTGTATGAAGATGCCTTACTTCATCATTTGGAAGATCAAAAGCGAGAGGCGGATATGGAGAAAGTGGGAGATATCATATGGGATATAACAAAGTATTTGTGTGGTTGCGCCAAACAAGAAGTTGAGTTTATTTGTGACTTGGAAGAGAATCTGCAATCTCTGAAGATTAAATGGGAAACGCTTGAAGCAATGAAGAAGGATGTGGAAGCACAGATTGAAGAAGCTGAGATTACCAGAGAGAGCCAAAGGTCACATCGAGTTAGTGTTTGGCTCGAAAGGATCCAACACATTCAAGAGGAAATTAAAGATGCATTGGTTACTACAGGATTGGATTTCGCCTTCGATCTTTGA 3225 0.4229 MPLRLEIKRKLAQRSERVKSVDLHPTEPWVLASLYSGTVCIYNYQSQTMSKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPDLPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYVKGSRRVVLGYDEGSIMVKLGREVPVASMDNSGKIIWAKHNEIQTANIKSVGTDVEVADGERLPLAVKELGTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTSLAWRNRSFGSALEMVWSSDGEYAVRESTSKIKIFSKNFQEKKSIRPTFSAERIFGGTLLAMCSNDFICFYDWSECRLIRRIDVNVKNLYWADSGDLVAVASDTSFYILKYNRDIVASYMDGGRTVDELGVEDAFELLHEINERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMAYTLLLSLIEYKTLVMRGDLERANEVLPSIPKEHQNSVARFLESRGMIEDALEVATDPDYRFELAMQLGRLEVAKSIATEVQSESKWKQLGELAMSTGKLEMAEECLKNAMDLSGLLLLYSSLGDAEGISNLATLAKEQGKNNVAFLCMFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLHKVSPKAAESLADPEEYPNLFEDWQVAVAVESKASETRSVYPPAEEYAQHAGKSYVTLVNAFRNMQIEEGEELLENGDSNHELIEQNDEELNAEDKQEEQNGEDAVVVDADSTDGAVLINGNEAEEEWGTNNEGAPAHSTSLGLIKTIGSSSCGCEVTVTEAMLRLWRSIVSLFLVLWYLLYEDALLHHLEDQKREADMEKVGDIIWDITKYLCGCAKQEVEFICDLEENLQSLKIKWETLEAMKKDVEAQIEEAEITRESQRSHRVSVWLERIQHIQEEIKDALVTTGLDFAFDL 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0441 1074 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Lele37g0441 1074 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Lele37g0441 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Lele37g0441 1074 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Lele37g0441 1074 FunFam Coatomer subunit beta 590 798 - -
Lele37g0441 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Lele37g0441 1074 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Lele37g0441 1074 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Lele37g0441 1074 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Lele37g0441 1074 Gene3D - 11 300 IPR015943 GO:0005515
Lele37g0441 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Lele37g0441 1074 SMART WD40_4 4 43 IPR001680 GO:0005515
Lele37g0441 1074 SMART WD40_4 174 215 IPR001680 GO:0005515
Lele37g0441 1074 SMART WD40_4 46 85 IPR001680 GO:0005515
Lele37g0441 1074 SMART WD40_4 131 171 IPR001680 GO:0005515
Lele37g0441 1074 SMART WD40_4 88 127 IPR001680 GO:0005515
Lele37g0441 1074 SMART WD40_4 218 257 IPR001680 GO:0005515
Lele37g0441 1074 Coils Coil 1009 1043 - -
Lele37g0441 1074 Gene3D - 590 798 - -
Lele37g0441 1074 Coils Coil 858 878 - -
Lele37g0441 1074 CDD WD40 17 297 - -
Lele37g0441 1074 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Lele37g0441 1074 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Lele37g0441 1074 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Lele37g0441 1074 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Lele37g0441 1074 Pfam WD domain, G-beta repeat 133 171 IPR001680 GO:0005515
Lele37g0441 1074 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Lele37g0441 1074 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Lele37g0441 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Lele37g0441 1074 PANTHER COATOMER 5 313 - -
Lele37g0441 1074 FunFam Coatomer subunit beta 11 300 - -
Lele37g0441 1074 SUPERFAMILY NHL repeat 221 492 - -
Lele37g0441 1074 PIRSF Beta'-COP 2 889 IPR016453 -
Lele37g0441 1074 PIRSF Beta'-COP 978 1074 IPR016453 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0441 Lele-ChrLele37 3591172 3616036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0441 51 292 Miscellaneous Gene Families AT5G08390 25.403 1.63e-18 89.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0538 43 4856979 4879030 Lele37g0441 37 3591172 3616036 CCT
Lele44g0503 44 3857432 3871539 Lele37g0441 37 3591172 3616036 CCT
Lele41g0852 41 18207492 18211294 Lele37g0441 37 3591172 3616036 CCT
Lele42g0843 42 21305748 21309580 Lele37g0441 37 3591172 3616036 CCT
Lele37g0441 37 3591172 3616036 Lele37g0441 37 3591172 3616036 ECH
Lele37g0441 37 3591172 3616036 Lele39g0989 39 18716405 18718692 hybridization
Lele37g0441 37 3591172 3616036 Lele40g0386 40 3099977 3109795 hybridization