Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0989 ATGATTTTGTCCGAACAGGCTTTCTCCCTTCAAATTGAGAATGAATTTGTTCAGAACTCAGAGAGAGTGAAGTCTGTTGATCTGCATCCAACTCAACCATGGATTCTAGTGGGTCTGTATTCAGGAACCATTTCCATTTGGAACTACCACACCAATACTGAAGAAAAGTCTTTCAAGCTCAGCGAATCACCAGTGAGATCAGCCAAGTTCATAGCACGTGAAAACTGGATTGTTGCTGCAACCGATGACAAATTTATCCGCGTTTACAGTTACGACAAAACAGAGAAGGTGAAGGAGTTTGAGGCTCATAAAGATTACATAAGGAGTTTGGTTGTTCATCCTACTCTTCCATATGTGATATCAGCTTCTGATGATCAAGTTCTGAAGGTCTGGGATTGGACTAATGGTTGGTCAAGTATTCACAACTTTGAAGGTCACTCTCATTATGTGATGCAAGTTGCATTGAATCCAAATGATGAATCTTCCTTTGCAAGTGCTTCCCTTGATGGCACTTTGAAGATTTGGAATCTAAACTCCTCAACTCCAAACTTTACCTTGGAAGGACACTTGAAAGGGGTGAATTGTGTTGACTATTTCACAAGCAATGACAAACAATATTTGTTGAGTGGTTCTGATGATTACACTGCTAAGGTTTGGGATTATCATTCTGAAAACGTTGTACAAACATTGGAAGGACATAAAAACAATGTTACAGCAATCTGTGCCCATCCTGAGTTTCCTATTATAATCACAGCTTCAGAGGATAACACTGTTAAAATATGGGATGCTGTCTCGTATAGGCTTCAAACCACTTTGAACTTTGGTCTAGAGAGAGTATGGAGTATTGCATACAAGAAAGGATCACACCAGCTTGCTTTTGGTTGTGACAAAGGATTCATCATAATAAAGATTGATTGCTCTCCTCAACACCTTCATGATGCTAAACAAGACTAG 954 0.3941 MILSEQAFSLQIENEFVQNSERVKSVDLHPTQPWILVGLYSGTISIWNYHTNTEEKSFKLSESPVRSAKFIARENWIVAATDDKFIRVYSYDKTEKVKEFEAHKDYIRSLVVHPTLPYVISASDDQVLKVWDWTNGWSSIHNFEGHSHYVMQVALNPNDESSFASASLDGTLKIWNLNSSTPNFTLEGHLKGVNCVDYFTSNDKQYLLSGSDDYTAKVWDYHSENVVQTLEGHKNNVTAICAHPEFPIIITASEDNTVKIWDAVSYRLQTTLNFGLERVWSIAYKKGSHQLAFGCDKGFIIIKIDCSPQHLHDAKQD 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0989 317 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 179 - -
Lele39g0989 317 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 57 IPR001680 GO:0005515
Lele39g0989 317 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 271 IPR001680 GO:0005515
Lele39g0989 317 CDD WD40 22 302 - -
Lele39g0989 317 Pfam WD domain, G-beta repeat 21 48 IPR001680 GO:0005515
Lele39g0989 317 Pfam WD domain, G-beta repeat 96 132 IPR001680 GO:0005515
Lele39g0989 317 Pfam WD domain, G-beta repeat 138 176 IPR001680 GO:0005515
Lele39g0989 317 Pfam WD domain, G-beta repeat 225 262 IPR001680 GO:0005515
Lele39g0989 317 Pfam WD domain, G-beta repeat 182 220 IPR001680 GO:0005515
Lele39g0989 317 SMART WD40_4 93 132 IPR001680 GO:0005515
Lele39g0989 317 SMART WD40_4 51 90 IPR001680 GO:0005515
Lele39g0989 317 SMART WD40_4 223 262 IPR001680 GO:0005515
Lele39g0989 317 SMART WD40_4 136 176 IPR001680 GO:0005515
Lele39g0989 317 SMART WD40_4 9 48 IPR001680 GO:0005515
Lele39g0989 317 SMART WD40_4 179 220 IPR001680 GO:0005515
Lele39g0989 317 ProSiteProfiles Trp-Asp (WD) repeats profile. 100 132 IPR001680 GO:0005515
Lele39g0989 317 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Lele39g0989 317 PRINTS G protein beta WD-40 repeat signature 207 221 IPR020472 -
Lele39g0989 317 PRINTS G protein beta WD-40 repeat signature 249 263 IPR020472 -
Lele39g0989 317 PANTHER COATOMER 11 305 - -
Lele39g0989 317 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 262 - -
Lele39g0989 317 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 220 - -
Lele39g0989 317 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 100 132 - -
Lele39g0989 317 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 229 IPR001680 GO:0005515
Lele39g0989 317 Gene3D - 15 305 IPR015943 GO:0005515
Lele39g0989 317 FunFam Coatomer alpha subunit, putative 16 305 - -
Lele39g0989 317 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 185 IPR001680 GO:0005515
Lele39g0989 317 SUPERFAMILY WD40 repeat-like 9 302 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0989 Lele-ChrLele39 18716405 18718692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0989 55 268 Miscellaneous Gene Families AT5G08390 26.364 2.22e-19 87.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0538 43 4856979 4879030 Lele39g0989 39 18716405 18718692 CCT
Lele44g0503 44 3857432 3871539 Lele39g0989 39 18716405 18718692 CCT
Lele41g0852 41 18207492 18211294 Lele39g0989 39 18716405 18718692 CCT
Lele42g0843 42 21305748 21309580 Lele39g0989 39 18716405 18718692 CCT
Lele39g0989 39 18716405 18718692 Lele39g0989 39 18716405 18718692 ECH
Lele37g0441 37 3591172 3616036 Lele39g0989 39 18716405 18718692 hybridization
Lele38g0406 38 3254495 3256589 Lele39g0989 39 18716405 18718692 hybridization