Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0853 ATGCCGACGTACAAGATTCGGGGAATCGATGTAGAATTCCCATTCGAGGCCTATGATTGTCAGCTTGTTTACATGGAGAAAGTCATACAATCACTTCAGGAGCAATGTAATGCACTGTTGGAGAGTCCCACAGGAACTGGCAAAACACTCTGTCTTCTATGTGCTACATTAGCCTGGCGGAAGAGTTTGGGCAGTTTCTCAACTGGTGCAAATGTTAAGACCCCTCAGAATTCTGGGGTCAATGTAGACATTCCATCTTCACAACCTGAGGCTTCAAAGCTTCCTACTATTATATATGCTTCACGCACTCACAGCCAGATCCGCCAAGTAATTCAAGAGTTGAAGAGAACATCATACAGGCCCAAAATGGTTGTTCTAGGATCTCGGGAGCAACTGTGCATTCATGATCAGGTGAGTCTACTTCAGGGAAGGACACAAACAAATGCTTGCCAGTTACTCTGCCGAAGGCATGGCAAGAATGGGAAACGTCGATGTAACCATAATGATCTTGTCCTTGAATACTCAAAGAGAAACCCCCATCTTGGAGAAGAACCTATAGATATTGAGGATTTGGTGAACATTGGAAAAAGATTTGGGCCGTGTCCTTACTACTTATCAAAAGAGCTCCACAAGGCTGCTGATATAGTGTTTGCACCATACAACTATCTTATTGATCGTGGGTATAGAAAATCTCTGAATATTTCTTGGAATGATAGCATACTCATATTTGATGAAGCTCACAACCTGGAAAGCTTATGTGCTGATGCTGCCTCTTTTGACTTGCCTTCTTGGCTTCTAACAGCTTGCATTTCTGAGGCTCAAAGTTGTGTTGATCTTTGTATAGACAGAAGAGACAAATTAAATGATAAGTCACGGAATCCAGATGATTTTGCCATCCTTAAAGCACTTCTACTAAAACTTGAAAAGCGAATTGCTGACGTACATATTGATTCCAAGGAATTGGGATACACCAAACCTGGACCTTATATCTATGAATTTTTCTCTGATCTTAATATCACTCATAAGACAGCTTCTAAGCTTAAGCGTACAATTGAAGAAGCTGGGATCCTTCTTGAGGAAGATAGTCAGCAGAAGGCAAGTAGCACCAATTTCAGGCTGCACAATATGAGTGACATCATTGACATTGTTTTCAGGGATGAAGGCACTGCTCATGCAAAATACTATCGGGTCCATGTGAAGGAGGTTGATACAAAAGCTACTGATAGCATGAAAGGTAAGGCTTCAAGGGTCCTTAGTTGGTGGTGCTTTAATCCAGGAATAGCCATGGAAGTTTTTCCTAAGTTGGGCGTTGGCTCTGTTATATTGACTTCTGGCACATTATCTCCCATGGAATCTTTTGCTCAGGAGCTAAAAATAGATTTTCCCATTCGTCTAGAAAATCAACATGTAATAACCCCAAATCAGATTTGGGCTGGAGTTGTACCAGTTGGCCCTTCAGGGCGTACTTTTAACTCTTCCTACCGCACGCGTGATTCTATAGAGTACAAGCAGGAGCTTGGTAATACAATTGTCAATTTGGCTCGAATTGTTCCTGATGGACTTCTTGTATTCTTCCCATCTTATTACCTTTTGGACCAATGCATTGGGTGCTGGAAAAACGTGAATAATGGAAATTCAACATCAATATGGGAGAGAATTTGCAAACATAAGAAACCTGTCATAGAACCCAGGCAATCTTCCTTGTTTTCCCTATCAATTGAGGACTACATATCTAAGCTGAAAGACACCTCTGCATCTGGAGCAGTATTTTTCGCCGTTTGTCGTGGCAAGGTAAGTGAAGGATTAGATTTTGCAGATCATGCTGGAAGAGCTGTGATGATAATTGGTATGCCATTTGCCACAAGTAATGATCCTAAGGTTCGTCTAAAGCGAGAATATTTGGATCAACAATCTCAAACCCAAGGAGAATTGTGTAAGGTTTTAACTGGAGAAGAGTGGTATAATCAGCAAGCTTCACGTGCAGTGAATCAAGCTGTTGGACGTGTAATCCGTCACCGCCATGACTATGGAGCAATTATCCTTTGCGATGAAAGGTTTGCACATCCACATCGTCAATCTCAAGTCTCACGTTGGATACAGCCTCACATCAAGTGTTTCTCAAAATTTGGAGAAGTAGTTTTCACTTTAACTCGATTTTTCCGTGATGGAGGAAGTCGCGGCCCTACAAAGCTGTCATTATTAGAAGCTGGAAATTGGGGTCAGTATGGTCTGGCACTGTGTTCTTTATCTTTTCCTTGTTTGTGGCCTCTCTATCCGACACTTCTTTGCCAATTGCCATTACATTATGGAAAAGATGGTCCTCTTTTTTCAAATAAGTTGCAGTCAGGAAGTGTAAAAGACATCAGAGCCCTGCCTGGGCAAATTTGGCCTGGAAAAACTCGTCTCTCCTGTAAATTCTTGATTGTGCATTCGACTCAAAATTTCTCTTCGAAAGCATTGTCTTCACTTGGTGCTAAAGAAGGCCATGTTCCGAATCTTGGGGAAATTATGCCTGCTAATCGTGCTTCTCTGGCTTTCAACAATTGCAAGAATATAGGCTGTAAGAATTCAAGAGACATATGTAATGATGTTTCACATGGGAGGGAGATTCCATCAGGAGTCGATGAAGTAATTGATTTGGCTGGTGGTGCTCAACGTGCCATAAAACTAAAGGATATACACACAGCACCTTTGGCCAAGAAGCGTAGATTTATAAGTGGAGAGTATGACTTAATGCAACATAGCGAACCGTCCGATCAGCATACACTTGTCCGTCAGAATGCTCAAAGTGGTGTGGAACTCTTACATAAAGATAATGGGGCCTCCCAAAGTAGGAGTAGGAATGTTGAGCTTCTTACACAAAAAGATAATCTTCCTCCAGATTCTGGACCTCCTGTAGATGAGGAAACCCGGGGATTGGCGTTCCTTGTTCAGGTTAGGGAGAAGCTCAGTGGTGCAGAGTATAAAGACTTTGTGAGCTATATGAAGGCTCTCAAGACCAAAGCCATGATGACGAGTGAAGTTTTGCGGTCCATATGCAGGTTGTTCTCTGGACCAGAGAGGCAACCGCTTCTTAAAAGGTTCAAGGATTACATTCCTGCAAAATATCATTCTTTGTATGAGCAGTATGTTGAAGAAAACAACTAA 3147 0.4198 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQEQCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTGANVKTPQNSGVNVDIPSSQPEASKLPTIIYASRTHSQIRQVIQELKRTSYRPKMVVLGSREQLCIHDQVSLLQGRTQTNACQLLCRRHGKNGKRRCNHNDLVLEYSKRNPHLGEEPIDIEDLVNIGKRFGPCPYYLSKELHKAADIVFAPYNYLIDRGYRKSLNISWNDSILIFDEAHNLESLCADAASFDLPSWLLTACISEAQSCVDLCIDRRDKLNDKSRNPDDFAILKALLLKLEKRIADVHIDSKELGYTKPGPYIYEFFSDLNITHKTASKLKRTIEEAGILLEEDSQQKASSTNFRLHNMSDIIDIVFRDEGTAHAKYYRVHVKEVDTKATDSMKGKASRVLSWWCFNPGIAMEVFPKLGVGSVILTSGTLSPMESFAQELKIDFPIRLENQHVITPNQIWAGVVPVGPSGRTFNSSYRTRDSIEYKQELGNTIVNLARIVPDGLLVFFPSYYLLDQCIGCWKNVNNGNSTSIWERICKHKKPVIEPRQSSLFSLSIEDYISKLKDTSASGAVFFAVCRGKVSEGLDFADHAGRAVMIIGMPFATSNDPKVRLKREYLDQQSQTQGELCKVLTGEEWYNQQASRAVNQAVGRVIRHRHDYGAIILCDERFAHPHRQSQVSRWIQPHIKCFSKFGEVVFTLTRFFRDGGSRGPTKLSLLEAGNWGQYGLALCSLSFPCLWPLYPTLLCQLPLHYGKDGPLFSNKLQSGSVKDIRALPGQIWPGKTRLSCKFLIVHSTQNFSSKALSSLGAKEGHVPNLGEIMPANRASLAFNNCKNIGCKNSRDICNDVSHGREIPSGVDEVIDLAGGAQRAIKLKDIHTAPLAKKRRFISGEYDLMQHSEPSDQHTLVRQNAQSGVELLHKDNGASQSRSRNVELLTQKDNLPPDSGPPVDEETRGLAFLVQVREKLSGAEYKDFVSYMKALKTKAMMTSEVLRSICRLFSGPERQPLLKRFKDYIPAKYHSLYEQYVEENN 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0853 1048 Pfam DEAD_2 99 262 IPR010614 GO:0003677|GO:0003678|GO:0005524
Lele41g0853 1048 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 29 288 IPR014001 -
Lele41g0853 1048 FunFam Regulator of telomere elongation helicase 1 487 705 - -
Lele41g0853 1048 Gene3D - 15 287 IPR027417 -
Lele41g0853 1048 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 6 722 IPR045028 -
Lele41g0853 1048 Pfam Helicase C-terminal domain 510 701 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Lele41g0853 1048 SMART Cxpdneu3 528 688 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Lele41g0853 1048 Gene3D - 486 705 IPR027417 -
Lele41g0853 1048 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 7 303 IPR014013 GO:0005524
Lele41g0853 1048 CDD SF2_C_XPD 474 686 - -
Lele41g0853 1048 Gene3D - 968 1048 - -
Lele41g0853 1048 MobiDBLite consensus disorder prediction 937 967 - -
Lele41g0853 1048 CDD DEAHc_FancJ 37 250 - -
Lele41g0853 1048 CDD HN_RTEL1 954 1046 - -
Lele41g0853 1048 SMART deadxpd 9 292 IPR006554 GO:0003678|GO:0016818
Lele41g0853 1048 MobiDBLite consensus disorder prediction 937 955 - -
Lele41g0853 1048 TIGRFAM rad3: DNA repair helicase (rad3) 11 712 IPR013020 GO:0003678
Lele41g0853 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 681 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0853 Lele-ChrLele41 18218017 18228225 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0853 41 18218017 18228225 Lele43g0538 43 4856979 4879030 hybridization
Lele41g0853 41 18218017 18228225 Lele44g0503 44 3857432 3871539 hybridization