Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0406 ATGACCTTGTCCGAGCAGGCTTTCTCCTTTCAAATTGAGAATAAATTTGTTCAGAACTCAGAGAGAGTGAAGTCTGTTGATTTGCATCCAACTCAACCATGGTTTGGGATTGGACTAATGGCTGGTCAAGTGTTAAGAACTTTTGAAGGTCACTCTCATTATGTGATGCAAGTTTCATTAAATCCAAATGATGAATCTTCCTTTGCAAGTGCTTCCCTTGATGGCAATTTGAAGATTTGGAATCTAAACTGCTTAACTCCAAACATTACCTTGGAAGGACACTTGAAAGGGGTGAATTGTGTTGAGTATTTCACAAGCAATGACAAACAATATTTGTTGAATGGTTCTGATAATTACACTGCTAAAGTTTGGGATTATCCAAATAAAAACGTTGTACAAACATTGGAAGGACATGAAAACAATGTTACAGCACCTGAGTTTCCTGTTATAATCACAGCTTCAGAGGATAACACTGTTAAAATATGGGATGCTGTCGCTTATAGGCTTCATACCACTTTGAACATTGGTCTAGAGAGAGTTTGGATTATTGGATACAAGAAAGGATCACATCAGTAA 576 0.3715 MTLSEQAFSFQIENKFVQNSERVKSVDLHPTQPWFGIGLMAGQVLRTFEGHSHYVMQVSLNPNDESSFASASLDGNLKIWNLNCLTPNITLEGHLKGVNCVEYFTSNDKQYLLNGSDNYTAKVWDYPNKNVVQTLEGHENNVTAPEFPVIITASEDNTVKIWDAVAYRLHTTLNIGLERVWIIGYKKGSHQ 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0406 191 SUPERFAMILY WD40 repeat-like 13 181 IPR036322 GO:0005515
Lele38g0406 191 ProSiteProfiles Trp-Asp (WD) repeats profile. 91 134 IPR001680 GO:0005515
Lele38g0406 191 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 83 - -
Lele38g0406 191 Gene3D - 9 191 IPR015943 GO:0005515
Lele38g0406 191 PRINTS G protein beta WD-40 repeat signature 68 82 IPR020472 -
Lele38g0406 191 PRINTS G protein beta WD-40 repeat signature 150 164 IPR020472 -
Lele38g0406 191 PRINTS G protein beta WD-40 repeat signature 112 126 IPR020472 -
Lele38g0406 191 PANTHER COATOMER 11 44 - -
Lele38g0406 191 Pfam WD domain, G-beta repeat 42 81 IPR001680 GO:0005515
Lele38g0406 191 Pfam WD domain, G-beta repeat 131 163 IPR001680 GO:0005515
Lele38g0406 191 Pfam WD domain, G-beta repeat 88 125 IPR001680 GO:0005515
Lele38g0406 191 SMART WD40_4 128 163 IPR001680 GO:0005515
Lele38g0406 191 SMART WD40_4 84 125 IPR001680 GO:0005515
Lele38g0406 191 SMART WD40_4 41 81 IPR001680 GO:0005515
Lele38g0406 191 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 83 IPR001680 GO:0005515
Lele38g0406 191 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 163 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0406 Lele-ChrLele38 3254495 3256589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0406 39 169 Miscellaneous Gene Families AT5G08390 33.333 1.12e-16 75.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0538 43 4856979 4879030 Lele38g0406 38 3254495 3256589 CCT
Lele44g0503 44 3857432 3871539 Lele38g0406 38 3254495 3256589 CCT
Lele41g0852 41 18207492 18211294 Lele38g0406 38 3254495 3256589 CCT
Lele42g0843 42 21305748 21309580 Lele38g0406 38 3254495 3256589 CCT
Lele38g0406 38 3254495 3256589 Lele38g0406 38 3254495 3256589 ECH
Lele38g0406 38 3254495 3256589 Lele39g0989 39 18716405 18718692 hybridization
Lele38g0406 38 3254495 3256589 Lele40g0386 40 3099977 3109795 hybridization