Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0843 ATGAGCGTGGTTGGTTTTGATTTTGGGAATGAGAGCTGCATTGTTGCTGTTGCAAGGCAGAGGGGGATTGATGTTGTACTCAATGATGAGTCCAAGCGTGAAACTCCTGCAGTTGTATGCTTTGGTGACAAACAAAGGTTCATTGGGACTGCCGGGGCTGCATCCACTATGATGAACCCCAAGAATGCAATCTCACAGATAAAGAGACTAATTGGCGGACAATTTTCCGACCCAGAATTGCAGCAGGATTTGAAATCATTGCCTTATGCTGTCACTGAAGGGCCTGATGGATTTCCATTAATTCATGCACGGTACTTGGGTGAAGTTAGAACATTTACACCTACTCAAGTCCTGGGAATGGTGTTGTCAGATCTCAAGGGGATAGCTGAGAAGAATCTGAATGCAGCTGTTGTTGATTGTTGCATTGGAATTCCAGTTTATTTTACCGATCTTCAGAGAAGGGCAGTCTTGGATGCGGCAAAGATTGCTGGCCTGCATCCTCTTCGCTTGATTCATGAAACAACGGCAACTGCCTTGGCTTATGGAATTTATAAAACAGATCTTCCTGAAAATGATCAACTGAATGTTGCCTTTGTTGATATTGGACATGCTAGCATGCAAGTGTGCATTGCTGGCTTTAAAAAGGGTCAGCTGAAAGTATTGGCCCATTCATTTGATAGGTCTCTAGGTGGTAGAGATTTTGATGAGGTCTTATTCAATCACTTTGCTGCAAAATTTAAGGAGGAGTACAAGATTGATGTTTTCCAGAATGCCAGGGCTTGTCTAAGGCTCAGGGCTGCTTGTGAGAAGCTGAAGAAGGTTCTCAGTGCAAATCCTGAGGCACCCCTGAACATTGAATGCCTAATGGAGGAGAAGGACGTCAGGGGATTCATCAAGCGTGATGATTTTGAGCAACTAAGTGCTCCAATTTTGGAGCGTGTGAAGGCACCTTTAGAGAAGGCATTAGCAGAAGCAAACCTTACAGTTGAGAATATTCACATGGTCGAGGTGGTTGGCTCAGGTTCTCGTGTACCAGCTATAAACAAAATATTGACAGAATTTTTTAAAAAGGAGCCTAGGCGCACAATGAATGCAAGTGAGTGTGTTGCCAAGGGTTGTGCCTTGCAATGTGCAATTCTTAGTCCAACATTTAAAGTACGAGAGTTTCAGGTCAATGAAAGCTTTCCGTTTTCAATTTCACTGTCATGGAAAGGTTCTGGTCCAGATGCACAAGAAAGTGGACCGGATAATCATCAAGGTACTGTTGTTTTTCCCAAAGGAAATGCCATACCTAGTGTCAAGGCCCTGACATTCTATAGGTCAGGAACTTTTTCTGTTGATGTACAGTATGATGATATGAGTGAGCTGCAAGGACCTGCAAAGATTAGCACATATAATATTGGTCCTTTCCAAACTACAAATAGTGAAAGGGCAAAAGTTAAAGTGAAAGTTCGTCTGAATTTGCATGGGATTGTATATGTTGAGTCAGCTACTCTCTTGGAGGAGGAAATTGCTGAGGTTCCAGTATCAAAAGAACCAGCTGGAGAAAATGCTAAGATGGACACTGATGAGGCTCCTACTGATGCTGCTGCACCGCCACCAAGCTCTAATGATACTGATGTCAATATGCAAGATGCAAAGGCAACTACTGATTACCCTGGGACCGAAAATGGCATCCCTGATACAGCAGACAAGCCTGTGCAGATGGATACTGATACCAAGGCTGAGGCTCCAAAGAAGAAGGTCAAGAAGACAAATATACCTTTCTCAGAGCAGGTTTATGGAGCCCTGGCCCCTGCAGATCTCCAGAAAGCTGTAGAGAAGGAGTTTGAAATGGCTTTACAAGATCGAGTGATGGAGGAGACAAAAGACAGGAAAAACGCAGTTGAGTCATATGTTTATGACATGAGAAACAAGCTTGCTGACAAATACCAAGATTTTGTCACTGCTCAAGAGAGGGAGGAGTTTACCACCCAACTTCAGGAGGTAGAAGACTGGTTATATGAAGATGGTGAAGATGAAACTAAAGGTGTATACATTGCAAAGCTTGAGGAACTCAAGAAGCGAGGTGATCCAATTGAAGAGCGTTACAAGGAATTTATGGGGAGGGGTACAATAATTGATCAGTTCATGTATTGCATAAACAGTTACAGAGAAGCTGCCATGTCAAATGATCCCAAATTCGATCATATTGACGTCTCCGAGAAGCAGAAGGTATTGAATCAATGTGTGGAAGCTGAGGCCTGGCTCAGGGAGAAGCAGCAGCAGCAGGATTCACTTCCAAAACATGCTGCTCCTGTACTCCTATCAGCTGACATTAGAAAGAAAGCTGAGGCAATTGATAGGTTCTGTAAGCCGATCATGACGAAACCAAGGCCAGCCAAGCCAGCTGCTCCTGAAGCGACTGCAACCCCACCTCCTCAGGGGGGTGAACAGCCACCACAAACTGAGGGGGATGCAAACACCAATGCTAATGCTGGCGCCAACGAAAATGATGGGGACGGTGCTGCTGGCCAGGCACCACCACCAACTGAACCCATGGAGACTGACAAGTCAGAGAACACAAGCTCTGCATAA 2577 0.4459 MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAVVCFGDKQRFIGTAGAASTMMNPKNAISQIKRLIGGQFSDPELQQDLKSLPYAVTEGPDGFPLIHARYLGEVRTFTPTQVLGMVLSDLKGIAEKNLNAAVVDCCIGIPVYFTDLQRRAVLDAAKIAGLHPLRLIHETTATALAYGIYKTDLPENDQLNVAFVDIGHASMQVCIAGFKKGQLKVLAHSFDRSLGGRDFDEVLFNHFAAKFKEEYKIDVFQNARACLRLRAACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDDFEQLSAPILERVKAPLEKALAEANLTVENIHMVEVVGSGSRVPAINKILTEFFKKEPRRTMNASECVAKGCALQCAILSPTFKVREFQVNESFPFSISLSWKGSGPDAQESGPDNHQGTVVFPKGNAIPSVKALTFYRSGTFSVDVQYDDMSELQGPAKISTYNIGPFQTTNSERAKVKVKVRLNLHGIVYVESATLLEEEIAEVPVSKEPAGENAKMDTDEAPTDAAAPPPSSNDTDVNMQDAKATTDYPGTENGIPDTADKPVQMDTDTKAEAPKKKVKKTNIPFSEQVYGALAPADLQKAVEKEFEMALQDRVMEETKDRKNAVESYVYDMRNKLADKYQDFVTAQEREEFTTQLQEVEDWLYEDGEDETKGVYIAKLEELKKRGDPIEERYKEFMGRGTIIDQFMYCINSYREAAMSNDPKFDHIDVSEKQKVLNQCVEAEAWLREKQQQQDSLPKHAAPVLLSADIRKKAEAIDRFCKPIMTKPRPAKPAAPEATATPPPQGGEQPPQTEGDANTNANAGANENDGDGAAGQAPPPTEPMETDKSENTSSA 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0843 858 CDD HSPA4_like_NDB 2 381 - -
Lele42g0843 858 Gene3D - 5 374 - -
Lele42g0843 858 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 630 IPR029047 -
Lele42g0843 858 Pfam Hsp70 protein 3 698 IPR013126 GO:0005524|GO:0140662
Lele42g0843 858 FunFam Heat shock 70 kDa protein 4 111 206 - -
Lele42g0843 858 Gene3D - 186 360 - -
Lele42g0843 858 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Lele42g0843 858 FunFam Heat shock 70 kDa protein 4 597 707 - -
Lele42g0843 858 Gene3D - 708 791 IPR029048 -
Lele42g0843 858 FunFam Heat shock 70 kDa protein 4 1 74 - -
Lele42g0843 858 FunFam Heat shock 70 kDa protein 4 38 113 - -
Lele42g0843 858 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 595 IPR029047 -
Lele42g0843 858 MobiDBLite consensus disorder prediction 532 551 - -
Lele42g0843 858 Gene3D - 598 704 IPR029048 -
Lele42g0843 858 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 717 796 IPR029048 -
Lele42g0843 858 MobiDBLite consensus disorder prediction 814 829 - -
Lele42g0843 858 Gene3D - 38 113 - -
Lele42g0843 858 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Lele42g0843 858 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 598 697 IPR029048 -
Lele42g0843 858 PANTHER HSC70CB, ISOFORM G-RELATED 1 830 - -
Lele42g0843 858 MobiDBLite consensus disorder prediction 784 858 - -
Lele42g0843 858 PRINTS 70kDa heat shock protein signature 2 15 - -
Lele42g0843 858 PRINTS 70kDa heat shock protein signature 363 383 - -
Lele42g0843 858 PRINTS 70kDa heat shock protein signature 30 42 - -
Lele42g0843 858 PRINTS 70kDa heat shock protein signature 140 160 - -
Lele42g0843 858 PRINTS 70kDa heat shock protein signature 332 348 - -
Lele42g0843 858 MobiDBLite consensus disorder prediction 508 583 - -
Lele42g0843 858 MobiDBLite consensus disorder prediction 798 812 - -
Lele42g0843 858 ProSiteProfiles Ig-like domain profile. 345 463 IPR007110 -
Lele42g0843 858 Gene3D Actin; Chain A, domain 4 230 313 - -
Lele42g0843 858 MobiDBLite consensus disorder prediction 567 583 - -
Lele42g0843 858 FunFam Heat shock 70 kDa protein 14 387 595 - -
Lele42g0843 858 FunFam Heat shock 70 kDa protein 4 230 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0843 Lele-ChrLele42 21305748 21309580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0843 4 438 Calmodulin-binding Proteins AT1G16030 35.616 1.04e-84 282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0843 42 21305748 21309580 Lele37g0441 37 3591172 3616036 CCT
Lele42g0843 42 21305748 21309580 Lele38g0406 38 3254495 3256589 CCT
Lele42g0843 42 21305748 21309580 Lele39g0989 39 18716405 18718692 CCT
Lele42g0843 42 21305748 21309580 Lele40g0386 40 3099977 3109795 CCT
Lele42g0843 42 21305748 21309580 Lele43g0540 43 4884233 4888291 hybridization