Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1446 ATGGACAAATGCCCGAAAGATACGCTGAAGCTGGCGTTGTGTGCCGATGTTCTGGGACTGGTTCATGTTGTTGTCGGAACTCCCTTGTCGGAGAAGTGTTGTGCATTGTTGGATGGATTGGTGGACTTGGAGGCAGCACTTTGTCTCTGCACAGCGATTAAGGCCAACTTGCTTGGAATCAACTTGAATGTTCCAGTCACTCTCAGCTTAATCCTTAGTGCTTGTCAGAAAACAGTGCCTCCTGGTTTCCAATGTCCTTAG 261 0.4828 MDKCPKDTLKLALCADVLGLVHVVVGTPLSEKCCALLDGLVDLEAALCLCTAIKANLLGINLNVPVTLSLILSACQKTVPPGFQCP 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1446 86 CDD HPS_like 2 85 IPR027923 -
Lele27g1446 86 Gene3D - 3 86 IPR036312 -
Lele27g1446 86 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 7 86 IPR036312 -
Lele27g1446 86 SMART aai_6 4 85 IPR016140 -
Lele27g1446 86 Pfam Hydrophobic seed protein 4 86 IPR027923 -
Lele27g1446 86 FunFam pEARLI1-like lipid transfer protein 1 2 86 - -
Lele27g1446 86 PANTHER - 3 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1446 Lele-ChrLele27 20657862 20658122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1446 1 86 Acyl Lipid Metabolism Gene Families AT4G22490 36.047 8.58e-17 67.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1446 27 20657862 20658122 Lele01g0649 01 3794181 3794765 CCT
Lele27g1446 27 20657862 20658122 Lele02g0635 02 3798330 3798911 CCT
Lele27g1446 27 20657862 20658122 Lele03g0648 03 3801987 3805025 CCT
Lele27g1446 27 20657862 20658122 Lele04g0655 04 3944359 3944946 CCT
Lele25g0637 25 4028780 4030682 Lele27g1446 27 20657862 20658122 hybridization
Lele26g0653 26 4146844 4147266 Lele27g1446 27 20657862 20658122 hybridization