Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0912 ATGGCTGCGACTAATTCAAAGTTCATCAAATGCGTCACAGTTGGAGATGGAGCTGTAGGGAAGACCTGCATGCTTATTTGCTATACCAGCAATAAATTCCCAACTGACTATATCCCGACGGTGTTCGATAATTTCAGTGCAAATGTGGTCGTTGAGGGCACAACCGTCAATTTAGGCCTCTGGGACACTGCCGGGCAAGAGGATTACAATAGATTAAGGCCTCTGAGCTATAGAGGAGCAGATGTTTTCGTCTTGGCTTTTTCTTTAGTTAGTCGTGCAAGTTATGAGAATGTACTGAAGAAGTGGATCCCTGAACTACAGCATTTTGCCCCAGGCATTCCAGTGGTACTAGTAGGCACCAAACTGGATCTCCGAGAAGATAAGTACTATCTGGCTGATCATCCTGGTCTAGTGCCTGTGACTACTGAGCAGGGTGAAGAACTCCGTAAACAAATTGGAGCTACTTATTACATTGAGTGCAGCTCAAAAACTCAGCAGAATGTCAAGGCGGTGTTTGATGCTGCGATCAAGATGGTGATCAAGCCTCCTCAGAAACAGAACGAGAAGAAGAAGAAGAAACCACGTGGAGGATGTCTGCTGTCAGAACGTTTGGTGTGGAAGAAATCATGTTTCGTCTTGAATGGAAGCTTGTCCTGA 657 0.4536 MAATNSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHFAPGIPVVLVGTKLDLREDKYYLADHPGLVPVTTEQGEELRKQIGATYYIECSSKTQQNVKAVFDAAIKMVIKPPQKQNEKKKKKPRGGCLLSERLVWKKSCFVLNGSLS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0912 218 SMART rab_sub_5 9 182 - -
Lele20g0912 218 ProSiteProfiles small GTPase Rho family profile. 2 179 - -
Lele20g0912 218 PANTHER RHO FAMILY GTPASE 7 198 IPR003578 GO:0005525|GO:0007264
Lele20g0912 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 179 IPR027417 -
Lele20g0912 218 ProSiteProfiles small GTPase Ras family profile. 4 213 IPR001806 GO:0003924|GO:0005525
Lele20g0912 218 ProSiteProfiles small GTPase Rab1 family profile. 4 210 - -
Lele20g0912 218 SMART rho_sub_3 11 182 IPR001806 GO:0003924|GO:0005525
Lele20g0912 218 SMART ras_sub_4 6 182 - -
Lele20g0912 218 CDD Rop_like 8 180 - -
Lele20g0912 218 FunFam Rac-like GTP-binding protein 3 2 201 - -
Lele20g0912 218 Pfam Ras family 10 179 IPR001806 GO:0003924|GO:0005525
Lele20g0912 218 PRINTS Transforming protein P21 ras signature 32 48 - -
Lele20g0912 218 PRINTS Transforming protein P21 ras signature 49 71 - -
Lele20g0912 218 PRINTS Transforming protein P21 ras signature 157 179 - -
Lele20g0912 218 PRINTS Transforming protein P21 ras signature 9 30 - -
Lele20g0912 218 PRINTS Transforming protein P21 ras signature 111 124 - -
Lele20g0912 218 TIGRFAM small_GTP: small GTP-binding protein domain 7 173 IPR005225 GO:0005525
Lele20g0912 218 Gene3D - 2 200 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0912 Lele-ChrLele20 15457143 15459652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0912 7 195 EF-hand Containing Proteins AT5G27540 25.131 2.02e-15 72.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1815 21 25767630 25768056 Lele20g0912 20 15457143 15459652 CCT
Lele22g1792 22 23083667 23084073 Lele20g0912 20 15457143 15459652 CCT
Lele23g0192 23 1252066 1253001 Lele20g0912 20 15457143 15459652 CCT
Lele24g1752 24 22729602 22731292 Lele20g0912 20 15457143 15459652 CCT
Lele20g0912 20 15457143 15459652 Lele21g1820 21 25792099 25793331 CCT
Lele20g0912 20 15457143 15459652 Lele22g1797 22 23114097 23115317 CCT
Lele20g0912 20 15457143 15459652 Lele23g0189 23 1219640 1220857 CCT
Lele20g0912 20 15457143 15459652 Lele24g1755 24 22759489 22760715 CCT
Lele17g1018 17 20886875 20889306 Lele20g0912 20 15457143 15459652 hybridization
Lele18g0521 18 3070497 3072971 Lele20g0912 20 15457143 15459652 hybridization