Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1797 ATGGAGTTCCACCGATCGCCTTCTTCTTCTTCATCCAACCATGTTCAATCTAGTAGCCTAACTTCTCTGTCTTCTCAACGCAGCCTTGCTTCAGTTCCTTCCCTGAACTCTCGTTCTCAGCAGCAACATGTCTCAGCAACCTATTATCGGCGTCTTGCAACTCTGAAAGGTCACACATCTTATATATCATGTATCTTTCTTGCTGGGAAATTCCTCTTCACTGGATCTTCTGACAGAGAAATCAGGTCCTGGAATCATTCTCCTTTTCATTCTGAAATATTCGACCCTGATGATGAACAGTCAAATTCATCAATCGTTAGCATGGTGACGGCAGGGAAAGGTGCAGTGAAGTCCTTGATAGTTCAGTCTGATAAACTCTTCAGTGCTCACCAAGACTACAAAATCAGAGTATGGAAGATTACCGGCGAGGAACCAGACCACCAGAAGTACACACGTTTAGCCACTTTACCGACGTTTGGTGACAGAGCCACGAAGGTTTTGAACCCAAAGAACCATGTTCAAATTCGGAGGCACAAGAAATGCACCTGGGTTCATCATGTGGACACGGTCTCTGCTCTGGCCTTGTCCAGGGACGAGACCTTGCTCTACTCAGTTTCATGGGATCGAACAGTCAAAGTCTGGCGAACCAGAGACTTCACTTGTTTAGAATCAGTGAACAACGCACATGATGATGCCATAAACGCCATAGCAGTTTCTGAAGATGGTTACGTTTACACTGGATCAGCAGATAAGAAGATCAAGGTGTGGAAGAAAGGAGAAGGAGAGAAGCAACATTGTCTGGTTGATACGTTAGAGAAACACAATTCTGGGATTAATGCCTTGGCTCTGAGCAGTGATGGGTCTCTGTTATATTCAGGTGCTTGTGACAGATCTATATTGGTTTGGGAAAAGGATGATGAAGAAGAAGAAGGGAAAATGAGGTTGGTGGGTGCGCTTAGGGGACACACGAAGTCGATATTATGCTTAGCGATGGTTTCAGATATGGTGTTTAGTGGTTCTGCAGATAAAACAATAAGAATGTGGAGAGGTTTTCATGGAGATTACTCATGTTTAGCAGTTTTAGAAGGACATAGTGGTCCTGTGAAGTGCTTAACTTCAGCGGTTGATCGTTGTAGTCCGTCTGAAGAATCTTTTCTAGTTTACAGTGGTAGTTTGGACTGCGACATTAAGGTTTGGCAGATCATCGTACCTGTTCTCTAG 1221 0.4414 MEFHRSPSSSSSNHVQSSSLTSLSSQRSLASVPSLNSRSQQQHVSATYYRRLATLKGHTSYISCIFLAGKFLFTGSSDREIRSWNHSPFHSEIFDPDDEQSNSSIVSMVTAGKGAVKSLIVQSDKLFSAHQDYKIRVWKITGEEPDHQKYTRLATLPTFGDRATKVLNPKNHVQIRRHKKCTWVHHVDTVSALALSRDETLLYSVSWDRTVKVWRTRDFTCLESVNNAHDDAINAIAVSEDGYVYTGSADKKIKVWKKGEGEKQHCLVDTLEKHNSGINALALSSDGSLLYSGACDRSILVWEKDDEEEEGKMRLVGALRGHTKSILCLAMVSDMVFSGSADKTIRMWRGFHGDYSCLAVLEGHSGPVKCLTSAVDRCSPSEESFLVYSGSLDCDIKVWQIIVPVL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1797 406 FunFam BnaA09g28200D protein 173 261 - -
Lele22g1797 406 CDD WD40 52 400 - -
Lele22g1797 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 214 - -
Lele22g1797 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 257 - -
Lele22g1797 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 348 - -
Lele22g1797 406 Gene3D - 8 262 IPR015943 GO:0005515
Lele22g1797 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 257 IPR001680 GO:0005515
Lele22g1797 406 Gene3D - 263 404 IPR015943 GO:0005515
Lele22g1797 406 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 401 IPR045182 -
Lele22g1797 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 348 IPR001680 GO:0005515
Lele22g1797 406 SUPERFAMILY WD40 repeat-like 51 401 IPR036322 GO:0005515
Lele22g1797 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 224 IPR001680 GO:0005515
Lele22g1797 406 Pfam WD domain, G-beta repeat 227 257 IPR001680 GO:0005515
Lele22g1797 406 Pfam WD domain, G-beta repeat 268 302 IPR001680 GO:0005515
Lele22g1797 406 Pfam WD domain, G-beta repeat 356 399 IPR001680 GO:0005515
Lele22g1797 406 Pfam WD domain, G-beta repeat 184 214 IPR001680 GO:0005515
Lele22g1797 406 Pfam WD domain, G-beta repeat 315 348 IPR001680 GO:0005515
Lele22g1797 406 Pfam WD domain, G-beta repeat 52 85 IPR001680 GO:0005515
Lele22g1797 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 55 85 IPR001680 GO:0005515
Lele22g1797 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 303 IPR001680 GO:0005515
Lele22g1797 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 303 - -
Lele22g1797 406 SMART WD40_4 218 257 IPR001680 GO:0005515
Lele22g1797 406 SMART WD40_4 312 349 IPR001680 GO:0005515
Lele22g1797 406 SMART WD40_4 176 215 IPR001680 GO:0005515
Lele22g1797 406 SMART WD40_4 264 303 IPR001680 GO:0005515
Lele22g1797 406 SMART WD40_4 48 85 IPR001680 GO:0005515
Lele22g1797 406 SMART WD40_4 102 139 IPR001680 GO:0005515
Lele22g1797 406 SMART WD40_4 354 400 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1797 Lele-ChrLele22 23114097 23115317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1797 176 401 Miscellaneous Gene Families AT5G08390 24.783 1.63e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1018 17 20886875 20889306 Lele22g1797 22 23114097 23115317 CCT
Lele18g0521 18 3070497 3072971 Lele22g1797 22 23114097 23115317 CCT
Lele19g0539 19 3120438 3122874 Lele22g1797 22 23114097 23115317 CCT
Lele20g0912 20 15457143 15459652 Lele22g1797 22 23114097 23115317 CCT
Lele21g1820 21 25792099 25793331 Lele22g1797 22 23114097 23115317 ECH
Lele22g1797 22 23114097 23115317 Lele22g1797 22 23114097 23115317 ECH
Lele22g1797 22 23114097 23115317 Lele23g0189 23 1219640 1220857 hybridization
Lele22g1797 22 23114097 23115317 Lele24g1755 24 22759489 22760715 hybridization