Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1820 ATGGAGTTTCACCGATCGTCTTCTTCTTCTTCTTCTTCATCCAACTATGTTCAATCTAAAAGACTTACTTCTCTGTCTTCACAACGCAGCCTTGCTTCAGTTCCTTCCCTGAACTCTCGTTCTCACCAACATGCTTCAGCAACTTATTATCAGTGTCTTGCAACTCTCAAAGGTCACACATCTTATATTTCATGCATCGCTCTTGCTGGGAAATTCCTCTACACTGGATCTTCTGATAGAGAAATCAGGTCCTGGAATAATTCTCCTTTCCATTCTGATATATTCGACCCTGATAATGAACAGTCAAATTCAATCGCTAGCATGGTGACGGCGGGGAAAGGTGCAGTGAAGTCCTTGATAGTTCAGTCTGATAAACTCTTCAGTGCTCACCAAGACTACAAAATCAGAGTATGGAAGATCACCGGCGACGAACCAGACCACCAGAAGTACACACGTTTAGCTACTTTACCGACGTTTGGTGACAGAGCGACGAAGGTTTTGAACCCCAAGAACCATGTTCAAATTCGGAGGCACAAAAAGTGCACCTGGGTTCATCATGTGGACACGGTCTCCGCTTTGGCCTTGTCCAGGGACGAGACCTTGCTTTACTCAGTTTCATGGGATCGAACAGTCAAAGTCTGGCGAACCAGAGACTTCACCTGTTTAGAATCGGTGAACAACGCACACGATGATGCAATAAACGCCATAGCAGTTTCAGATGATGGTTACGTGTACACTGGATCAGCAGATAAGAAGATCAAGGTGTGGAAGAAACGAGAAGGAGAGAAGAATCATTGTCTGGTTGATACATTAGAGAAACACAATTCTGGGATTAATGCTTTGGCTCTGAGCAGTGATGGGTCTCTGTTATATTCAGGTGCTTGTGACAGATCTATATTGGTTTGGAAGAAGGATGAAGAAGAAGGAGAAGGAGAAGGAGAAGGGAAAATGAGGCTGGTGGGTGCGCTTAGGGGACACACGAAATCGATATTATGCTTAGCGATGGTTTCGGATTTGGTGTTTAGTGGTTCAGCAGATAAAACGATAAGAATATGGAGAGGTGTTCATGGTGATTACTCATGTTTAGGAGCTTTAGAAGGGCATAGTGGTCCTGTGAAGTGCTTAACTGCAGCGAGTGAAAGTTGTAGTCCGACGGAAGAGTCTTTTCTAGTTTACAGTGGCAGTTTGGACTGTGACATTAAGGTTTGGCAGATCATTGTACCTGTTCTCTAG 1233 0.442 MEFHRSSSSSSSSSNYVQSKRLTSLSSQRSLASVPSLNSRSHQHASATYYQCLATLKGHTSYISCIALAGKFLYTGSSDREIRSWNNSPFHSDIFDPDNEQSNSIASMVTAGKGAVKSLIVQSDKLFSAHQDYKIRVWKITGDEPDHQKYTRLATLPTFGDRATKVLNPKNHVQIRRHKKCTWVHHVDTVSALALSRDETLLYSVSWDRTVKVWRTRDFTCLESVNNAHDDAINAIAVSDDGYVYTGSADKKIKVWKKREGEKNHCLVDTLEKHNSGINALALSSDGSLLYSGACDRSILVWKKDEEEGEGEGEGKMRLVGALRGHTKSILCLAMVSDLVFSGSADKTIRIWRGVHGDYSCLGALEGHSGPVKCLTAASESCSPTEESFLVYSGSLDCDIKVWQIIVPVL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1820 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 303 - -
Lele21g1820 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 214 - -
Lele21g1820 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 352 IPR001680 GO:0005515
Lele21g1820 410 Pfam WD domain, G-beta repeat 51 86 IPR001680 GO:0005515
Lele21g1820 410 Pfam WD domain, G-beta repeat 184 214 IPR001680 GO:0005515
Lele21g1820 410 Pfam WD domain, G-beta repeat 319 352 IPR001680 GO:0005515
Lele21g1820 410 Pfam WD domain, G-beta repeat 268 303 IPR001680 GO:0005515
Lele21g1820 410 Pfam WD domain, G-beta repeat 227 257 IPR001680 GO:0005515
Lele21g1820 410 Pfam WD domain, G-beta repeat 360 403 IPR001680 GO:0005515
Lele21g1820 410 Gene3D - 151 407 IPR015943 GO:0005515
Lele21g1820 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 86 IPR001680 GO:0005515
Lele21g1820 410 SUPERFAMILY WD40 repeat-like 50 405 IPR036322 GO:0005515
Lele21g1820 410 FunFam BnaA09g28200D protein 173 261 - -
Lele21g1820 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 257 - -
Lele21g1820 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 303 IPR001680 GO:0005515
Lele21g1820 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 266 IPR001680 GO:0005515
Lele21g1820 410 Gene3D - 9 148 IPR015943 GO:0005515
Lele21g1820 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 224 IPR001680 GO:0005515
Lele21g1820 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 352 - -
Lele21g1820 410 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 9 405 IPR045182 -
Lele21g1820 410 CDD WD40 52 404 - -
Lele21g1820 410 SMART WD40_4 49 86 IPR001680 GO:0005515
Lele21g1820 410 SMART WD40_4 176 215 IPR001680 GO:0005515
Lele21g1820 410 SMART WD40_4 218 257 IPR001680 GO:0005515
Lele21g1820 410 SMART WD40_4 264 303 IPR001680 GO:0005515
Lele21g1820 410 SMART WD40_4 102 139 IPR001680 GO:0005515
Lele21g1820 410 SMART WD40_4 358 404 IPR001680 GO:0005515
Lele21g1820 410 SMART WD40_4 316 353 IPR001680 GO:0005515
Lele21g1820 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 56 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1820 Lele-ChrLele21 25792099 25793331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1820 176 405 Miscellaneous Gene Families AT5G08390 23.932 2.14e-09 57.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1018 17 20886875 20889306 Lele21g1820 21 25792099 25793331 CCT
Lele18g0521 18 3070497 3072971 Lele21g1820 21 25792099 25793331 CCT
Lele19g0539 19 3120438 3122874 Lele21g1820 21 25792099 25793331 CCT
Lele20g0912 20 15457143 15459652 Lele21g1820 21 25792099 25793331 CCT
Lele21g1820 21 25792099 25793331 Lele22g1797 22 23114097 23115317 ECH
Lele21g1820 21 25792099 25793331 Lele21g1820 21 25792099 25793331 ECH
Lele21g1820 21 25792099 25793331 Lele23g0189 23 1219640 1220857 hybridization
Lele21g1820 21 25792099 25793331 Lele24g1755 24 22759489 22760715 hybridization