Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele23g0189 | ATGGAGTTCCACCGATCGTCTTCTTCTTCTTCTTCATCCAACCATGTTCAATCTACAAGACTTACTTCTCTGTCTTCACAACGCAGCCTTGCTTCGGTTCCTTCCCTGAACTCTCGTTCTCACCAACATGCTTCAGCAACTTATTATCAGTGCCTTGCAACTCTCAAAGGTCACACATCTTATATTTCATGCATGGCTCTTGCTGGGAAATTCCTCTACACTGGATCTTCTGATAGAGAAATCAGGTCCTGGAATCATTCTCCTTTCCATTCTGATATATTCGACCCCTATGATGAACAGTCAAATTCAATAGCTAGCATGGTGACGGCGGGGAAAGGTGCGGTGAAGTCCTTGATAGTTCAGTCTGATAAACTCTTCAGTGCTCACCAAGACTACAAAATCAGAGTATGGAAGATCACCGGCGACGAACCAGACCACCAGAAGTACACACGTTTAGCTACTTTACCGACGTTTGGTGACAGAGCGACGAAGGTTTTGAACCCCAAGAACCATGTTAAAATTCGGAGGCACAAAACATGCACCTGGGTTCATCATGTGGACACGGTCTCTGCTTTGGCCTTGTCCAGGGACGAGACCTTGCTTTACTCAGTTTCATGGGATCGAACAGTCAAAGTCTGGCGAACCAGAGACTTCACCTGTTTAGAATCGGTGAACAACGCACACGATGATGCAATAAACGCCATAGCAGTTTCAGATGATGGTTACGTGTACACTGGATCAGCAGATAAGAAGATCAAGGTGTGGAAGAAACGAGAAGGAGAGAAGAAACATTGTCTTGTTGATACGTTAGAGAAACACAATTCTGGGATTAATGCTTTGGCTCTGAGCAGTGATGGGTCTCTGTTATATTCAGGTGCTTGTGACAGATCTATATTGGTTTGGGAGAAGGATGAAGAAGAAGAAGATGGGAAAATGAGGCTGGTGGGTGCGCTTAGGGGACACACGAAGTCGATATTATGCTTAGCGATGGTTTCGGATTTGGTGTTTAGTGGTTCCGCAGATAAAACGATAAGAATATGGAGAGGTGTTCATGGTGATTATTCATGTTTAGGAGTTTTAGAAGGGCATAGTGGTCCTGTGAAGAGCTTAACTGCAGCGAGTGAAAGTTGTAGTCCGACGGAAGAATCTTTTCTCGTTTACAGTGGCAGTTTGGACTGTGATATTAAGGTTTGGCAGATCATTGTACCTGTTCTCTAG | 1218 | 0.445 | MEFHRSSSSSSSSNHVQSTRLTSLSSQRSLASVPSLNSRSHQHASATYYQCLATLKGHTSYISCMALAGKFLYTGSSDREIRSWNHSPFHSDIFDPYDEQSNSIASMVTAGKGAVKSLIVQSDKLFSAHQDYKIRVWKITGDEPDHQKYTRLATLPTFGDRATKVLNPKNHVKIRRHKTCTWVHHVDTVSALALSRDETLLYSVSWDRTVKVWRTRDFTCLESVNNAHDDAINAIAVSDDGYVYTGSADKKIKVWKKREGEKKHCLVDTLEKHNSGINALALSSDGSLLYSGACDRSILVWEKDEEEEDGKMRLVGALRGHTKSILCLAMVSDLVFSGSADKTIRIWRGVHGDYSCLGVLEGHSGPVKSLTAASESCSPTEESFLVYSGSLDCDIKVWQIIVPVL | 405 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele23g0189 | 405 | FunFam | BnaA09g28200D protein | 172 | 260 | - | - | |
| Lele23g0189 | 405 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 55 | 85 | - | - | |
| Lele23g0189 | 405 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 225 | 265 | IPR001680 | GO:0005515 | |
| Lele23g0189 | 405 | Gene3D | - | 163 | 265 | IPR015943 | GO:0005515 | |
| Lele23g0189 | 405 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 270 | 302 | - | - | |
| Lele23g0189 | 405 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 318 | 347 | - | - | |
| Lele23g0189 | 405 | SMART | WD40_4 | 48 | 85 | IPR001680 | GO:0005515 | |
| Lele23g0189 | 405 | SMART | WD40_4 | 175 | 214 | IPR001680 | GO:0005515 | |
| Lele23g0189 | 405 | SMART | WD40_4 | 311 | 348 | IPR001680 | GO:0005515 | |
| Lele23g0189 | 405 | SMART | WD40_4 | 217 | 256 | IPR001680 | GO:0005515 | |
| Lele23g0189 | 405 | SMART | WD40_4 | 101 | 138 | IPR001680 | GO:0005515 | |
| Lele23g0189 | 405 | SMART | WD40_4 | 353 | 399 | IPR001680 | GO:0005515 | |
| Lele23g0189 | 405 | SMART | WD40_4 | 263 | 302 | IPR001680 | GO:0005515 | |
| Lele23g0189 | 405 | Pfam | WD domain, G-beta repeat | 182 | 213 | IPR001680 | GO:0005515 | |
| Lele23g0189 | 405 | Pfam | WD domain, G-beta repeat | 50 | 85 | IPR001680 | GO:0005515 | |
| Lele23g0189 | 405 | Pfam | WD domain, G-beta repeat | 226 | 256 | IPR001680 | GO:0005515 | |
| Lele23g0189 | 405 | Pfam | WD domain, G-beta repeat | 314 | 347 | IPR001680 | GO:0005515 | |
| Lele23g0189 | 405 | Pfam | WD domain, G-beta repeat | 267 | 301 | IPR001680 | GO:0005515 | |
| Lele23g0189 | 405 | Pfam | WD domain, G-beta repeat | 355 | 398 | IPR001680 | GO:0005515 | |
| Lele23g0189 | 405 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 318 | 347 | IPR001680 | GO:0005515 | |
| Lele23g0189 | 405 | CDD | WD40 | 51 | 399 | - | - | |
| Lele23g0189 | 405 | Gene3D | - | 266 | 401 | IPR015943 | GO:0005515 | |
| Lele23g0189 | 405 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 182 | 213 | - | - | |
| Lele23g0189 | 405 | SUPERFAMILY | WD40 repeat-like | 49 | 400 | IPR036322 | GO:0005515 | |
| Lele23g0189 | 405 | Gene3D | - | 20 | 162 | IPR015943 | GO:0005515 | |
| Lele23g0189 | 405 | PANTHER | F-BOX AND WD40 DOMAIN PROTEIN | 9 | 400 | IPR045182 | - | |
| Lele23g0189 | 405 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 270 | 302 | IPR001680 | GO:0005515 | |
| Lele23g0189 | 405 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 55 | 85 | IPR001680 | GO:0005515 | |
| Lele23g0189 | 405 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 182 | 223 | IPR001680 | GO:0005515 | |
| Lele23g0189 | 405 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 225 | 256 | - | - | |
| Lele23g0189 | 405 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele23g0189 | Lele-ChrLele23 | 1219640 | 1220857 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele23g0189 | 175 | 400 | Miscellaneous Gene Families | AT5G08390 | 24.783 | 1.90e-10 | 60.8 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele17g1018 | 17 | 20886875 | 20889306 | Lele23g0189 | 23 | 1219640 | 1220857 | CCT | |
| Lele18g0521 | 18 | 3070497 | 3072971 | Lele23g0189 | 23 | 1219640 | 1220857 | CCT | |
| Lele19g0539 | 19 | 3120438 | 3122874 | Lele23g0189 | 23 | 1219640 | 1220857 | CCT | |
| Lele20g0912 | 20 | 15457143 | 15459652 | Lele23g0189 | 23 | 1219640 | 1220857 | CCT | |
| Lele23g0189 | 23 | 1219640 | 1220857 | Lele24g1755 | 24 | 22759489 | 22760715 | ECH | |
| Lele23g0189 | 23 | 1219640 | 1220857 | Lele23g0189 | 23 | 1219640 | 1220857 | ECH | |
| Lele21g1820 | 21 | 25792099 | 25793331 | Lele23g0189 | 23 | 1219640 | 1220857 | hybridization | |
| Lele22g1797 | 22 | 23114097 | 23115317 | Lele23g0189 | 23 | 1219640 | 1220857 | hybridization |