Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1755 ATGGAGTTCCACCGATCGCCTTCTTCTTCTTCTTCATCCAACCATGTTCAACCTAGTAGCCTAACTTCTCTGTCTTCTCAACGCAGCCTTGCTTCAGTTCCTTCCCTGAACTCTCGTTCTCAGCAGCAACATGTCTCAGCAACCTATTATCGGTGTCTTGCAACTCTGAAAGGTCACACATCTTATATATCATGTATCGTTCTTGCTGGGAAATTCCTCTACACTGGATCTTCTGACAGAGAAATCAGGTCCTGGAATCATTCTCCTGTTCATTCTGAAATATTCGACCCTGATGATGAACAGTCAAATTCATCAATCGCTAGCATGATGACGGCAGGGAAAGGTGCAGTGAAGTCCTTGATAGTTCAGTCTGATAAACTCTTCAGTGCTCACCAAGACTACAAAATCAGAGTATGGAAGATTACCGGCGAGGAACCAGACCACCAGAAGTACACACGTTTAGCCACTTTACCGACGTTTGGTGACAGAGCCACGAAGGTTTTGAACCCAAAGAACCATGTTCAGATTCGGAGGCACAAGAAATGCACCTGGGTTCATCATGTGGACACGGTCTCTGCTCTGGCCTTGTCCAGGGACGAGACCTTGCTCTACTCAGTTTCATGGGATCGAACAGTCAAAGTCTGGCGAACCAGAGATTTCACTTGTTTAGAATCAGTGAACAACGCACATGATGATGCCATAAACGCCATAGCAGTTTCTGATGATGGTTACGTTTACACTGGATCAGCAGATAAGAAGATCAAGGTGTGGAAGAAAGGAGAAGGAGAGAAGAAACATTGTCTGGTTGATACGTTAGAGAAACACAATTCTGGGATTAACGCCTTGGCTCTGAGCAGTGATGGGTCTCTGTTATATTCAGGTGCTTGTGACAGATCTATATTGGTGTGGGAAAAGGATGATGATGATGAAGAAGAAGGGAAAATGAGGTTGGTGGGTGCGCTTAGGGGACACACGAAGTCGATATTATGCTTAGCGATGGTTTCAGATATGGTGTTTAGTGGTTCTGCAGATAAAACAATAAGAATGTGGAGAGGTGTTCGTGGAGATTACTCATGTTTAGCAGTTTTAGAAGGACATAGTGGTCCTGTGAAGTGCTTAACTTCAGCGGTTGATCGTGGTAGTCCGTCTGAAGAATCTTTTCTAGTTTACAGTGGTAGTTTGGACTGTGACATTAAGGTTTGGCAGATCATTGTACCTGTTCTCTAG 1227 0.4442 MEFHRSPSSSSSSNHVQPSSLTSLSSQRSLASVPSLNSRSQQQHVSATYYRCLATLKGHTSYISCIVLAGKFLYTGSSDREIRSWNHSPVHSEIFDPDDEQSNSSIASMMTAGKGAVKSLIVQSDKLFSAHQDYKIRVWKITGEEPDHQKYTRLATLPTFGDRATKVLNPKNHVQIRRHKKCTWVHHVDTVSALALSRDETLLYSVSWDRTVKVWRTRDFTCLESVNNAHDDAINAIAVSDDGYVYTGSADKKIKVWKKGEGEKKHCLVDTLEKHNSGINALALSSDGSLLYSGACDRSILVWEKDDDDEEEGKMRLVGALRGHTKSILCLAMVSDMVFSGSADKTIRMWRGVRGDYSCLAVLEGHSGPVKCLTSAVDRGSPSEESFLVYSGSLDCDIKVWQIIVPVL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1755 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Lele24g1755 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 258 IPR001680 GO:0005515
Lele24g1755 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 86 IPR001680 GO:0005515
Lele24g1755 408 SUPERFAMILY WD40 repeat-like 50 403 IPR036322 GO:0005515
Lele24g1755 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 304 IPR001680 GO:0005515
Lele24g1755 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 258 - -
Lele24g1755 408 SMART WD40_4 49 86 IPR001680 GO:0005515
Lele24g1755 408 SMART WD40_4 314 351 IPR001680 GO:0005515
Lele24g1755 408 SMART WD40_4 177 216 IPR001680 GO:0005515
Lele24g1755 408 SMART WD40_4 219 258 IPR001680 GO:0005515
Lele24g1755 408 SMART WD40_4 265 304 IPR001680 GO:0005515
Lele24g1755 408 SMART WD40_4 102 140 IPR001680 GO:0005515
Lele24g1755 408 SMART WD40_4 356 402 IPR001680 GO:0005515
Lele24g1755 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 215 - -
Lele24g1755 408 MobiDBLite consensus disorder prediction 1 24 - -
Lele24g1755 408 Gene3D - 1 150 IPR015943 GO:0005515
Lele24g1755 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 304 - -
Lele24g1755 408 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 403 IPR045182 -
Lele24g1755 408 FunFam BnaA09g28200D protein 174 262 - -
Lele24g1755 408 Pfam WD domain, G-beta repeat 228 258 IPR001680 GO:0005515
Lele24g1755 408 Pfam WD domain, G-beta repeat 51 86 IPR001680 GO:0005515
Lele24g1755 408 Pfam WD domain, G-beta repeat 269 303 IPR001680 GO:0005515
Lele24g1755 408 Pfam WD domain, G-beta repeat 185 215 IPR001680 GO:0005515
Lele24g1755 408 Pfam WD domain, G-beta repeat 317 350 IPR001680 GO:0005515
Lele24g1755 408 Pfam WD domain, G-beta repeat 358 401 IPR001680 GO:0005515
Lele24g1755 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 350 IPR001680 GO:0005515
Lele24g1755 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 321 350 - -
Lele24g1755 408 CDD WD40 52 402 - -
Lele24g1755 408 Gene3D - 152 405 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1755 Lele-ChrLele24 22759489 22760715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1755 177 403 Miscellaneous Gene Families AT5G08390 24.675 8.53e-10 58.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1018 17 20886875 20889306 Lele24g1755 24 22759489 22760715 CCT
Lele18g0521 18 3070497 3072971 Lele24g1755 24 22759489 22760715 CCT
Lele19g0539 19 3120438 3122874 Lele24g1755 24 22759489 22760715 CCT
Lele20g0912 20 15457143 15459652 Lele24g1755 24 22759489 22760715 CCT
Lele23g0189 23 1219640 1220857 Lele24g1755 24 22759489 22760715 ECH
Lele24g1755 24 22759489 22760715 Lele24g1755 24 22759489 22760715 ECH
Lele21g1820 21 25792099 25793331 Lele24g1755 24 22759489 22760715 hybridization
Lele22g1797 22 23114097 23115317 Lele24g1755 24 22759489 22760715 hybridization