Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1018 ATGGCTGCTACTAATTCAAAGTTCATCAAATGCGTCACAGTTGGAGACGGAGCCGTAGGGAAGACCTGCATGCTTATGTGCTATACCAGCAATAAATTCCCAACCGACTATATCCCGACGGTGTTCGATAATTTCAGTGCAAATGTGGTCGTTGAGGGCACAACCGTCAATTTAGGCCTCTGGGACACTGCTGGGCAAGAGGATTACAACAGATTGAGGCCTTTGAGCTATAGAGGAGCAGATGTTTTTGTCTTGGCTTTCTCTTTAGTTAGTCGTGCAAGCTACGAGAATGTACTGAAGAAGTGGATTCCTGAACTACAGCATTTTGCCCCAGGCATTCCAGTGGTATTAGTAGGCACCAAACTGGATCTCCGAGAAGATAAGTACTATCTGGCTGATCATCCTGGTCTAGTGCCTGTGACTACTGAGCAGGGTGAGGAACTCCGTAAACAAATTGGAGCTACCTATTACGTTGAGTGCAGCTCAAAAACTCAGCAGAATGTCAAGGTGGTGTTCGATGTCGCGATCAAGATGGTGATCAAGCCTCCTCAGAAACAGAACGAGAAGAAGAAGAAGAAGAAACCACGTGGAGGATGTCTGCTAAACGTTTGGTGTGGAAGCAATCATGTTTCGTCATGA 639 0.4617 MAATNSKFIKCVTVGDGAVGKTCMLMCYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHFAPGIPVVLVGTKLDLREDKYYLADHPGLVPVTTEQGEELRKQIGATYYVECSSKTQQNVKVVFDVAIKMVIKPPQKQNEKKKKKKPRGGCLLNVWCGSNHVSS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1018 212 SMART rho_sub_3 11 182 IPR001806 GO:0003924|GO:0005525
Lele17g1018 212 TIGRFAM small_GTP: small GTP-binding protein domain 7 173 IPR005225 GO:0005525
Lele17g1018 212 ProSiteProfiles small GTPase Rho family profile. 2 179 - -
Lele17g1018 212 SMART rab_sub_5 9 182 - -
Lele17g1018 212 FunFam Rac-like GTP-binding protein 3 2 202 - -
Lele17g1018 212 CDD Rop_like 8 180 - -
Lele17g1018 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 179 IPR027417 -
Lele17g1018 212 SMART ras_sub_4 6 182 - -
Lele17g1018 212 PRINTS Transforming protein P21 ras signature 49 71 - -
Lele17g1018 212 PRINTS Transforming protein P21 ras signature 157 179 - -
Lele17g1018 212 PRINTS Transforming protein P21 ras signature 9 30 - -
Lele17g1018 212 PRINTS Transforming protein P21 ras signature 111 124 - -
Lele17g1018 212 PRINTS Transforming protein P21 ras signature 32 48 - -
Lele17g1018 212 Gene3D - 2 201 IPR027417 -
Lele17g1018 212 PANTHER RHO FAMILY GTPASE 7 199 IPR003578 GO:0005525|GO:0007264
Lele17g1018 212 Pfam Ras family 10 179 IPR001806 GO:0003924|GO:0005525
Lele17g1018 212 ProSiteProfiles small GTPase Ras family profile. 4 201 IPR001806 GO:0003924|GO:0005525
Lele17g1018 212 ProSiteProfiles small GTPase Rab1 family profile. 4 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1018 Lele-ChrLele17 20886875 20889306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1018 7 182 EF-hand Containing Proteins AT5G27540 25.000 3.18e-14 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1815 21 25767630 25768056 Lele17g1018 17 20886875 20889306 CCT
Lele22g1792 22 23083667 23084073 Lele17g1018 17 20886875 20889306 CCT
Lele23g0192 23 1252066 1253001 Lele17g1018 17 20886875 20889306 CCT
Lele24g1752 24 22729602 22731292 Lele17g1018 17 20886875 20889306 CCT
Lele17g1018 17 20886875 20889306 Lele21g1820 21 25792099 25793331 CCT
Lele17g1018 17 20886875 20889306 Lele22g1797 22 23114097 23115317 CCT
Lele17g1018 17 20886875 20889306 Lele23g0189 23 1219640 1220857 CCT
Lele17g1018 17 20886875 20889306 Lele24g1755 24 22759489 22760715 CCT
Lele17g1018 17 20886875 20889306 Lele19g0539 19 3120438 3122874 hybridization
Lele17g1018 17 20886875 20889306 Lele20g0912 20 15457143 15459652 hybridization