Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1010 ATGGAGCATCACCGATCCTATGATGTCTCTTCTTCTTCTTCCTCGTCCTCACACCATCTTCAAACAGGGCAACGAAGCATCGCTTCAGTGCGTTCCCTGAACTCACAATCTCGTCACCACCATGAAATCCATCCTTCTTCCGCCGCCTACCACCGGTGCCTCGCGACTCTCAAAGGCCACAACACTTCCTACACATCTTGTCTTGCGCTCTCTGGGAAATTCCTCTACACAGGTTCATCTGACAGAGAAATCAGATCATGGAATCGCACTGAGTTAGACGACCCTGAAAATTCCATCACCAACATAGCACTTTCAGGGAAGGGTGCAGTAAAATCCATCGTGGCTCAATCTGATAAACTTTTCAGCGCTCACCAAGATCACAAAATCAGAGTATGGAAGATCATCAGCAACCACGAAACCGACCCACAGGAGTACACGCATGTAGCCACACTTCCAACGTTGGTTGATCGAGCTTCCAAAATTTTGATCCCAAAAAACCATATCCAGATCAGAAGGCACAAGAAATGCACGTGGGTTCATCACGTGGACACCGTCTCTGCTCTAGCCTTGTCCAAAGACGAGACCTTGCTCTACTCAGTTTCATGGGACAGGACAATCAAAATATGGAGAACCAGAGATTTCACCTGTTTAGAATCAGTAACAAACGCACATGACGATGCCATAAACGCGGTCGCAGTCTCCAACGATGGGTACGTATACACAGGATCAGCAGATCGGAGAATCAAAGTGTGGAAGAAAGAAGAAGGAGAAAAGAAGCATACTTTGGTAGATACATTAGAGAAACACAATTCTGGGATCAATGCATTGGCTCTGAGCAGTGATGGGGGTGTGATGTATTCTGGTGCTAGTGACAGATCGATACTGGTTTGGGAGAAAGATGAAGAAGAAGAAGGGAAAATGAAGTTGGTGGGGGCATTAAGAGGGCACACGATGTCTATATTGTGTTTGGGAGTGGTTTGGGATTTGGTGTGTAGTGGTTCTGCGGATAGAACGATTAGGATATGGAGAGGGATAGAGAAAGACTATTCGTGTTTAGCAGTTTTGGAAGGGCATAGAGGAGCAATTAAGTGTATAACTGCGGCGGTTGATCGCTGTGATTCTTCGGAAGCTTCTTTTCTAGTGTATAGTGGAAGTTTGGACTGCGACATTAAGATGTGGCAGATTGTTGTTCCTGTTTCTTAG 1203 0.4589 MEHHRSYDVSSSSSSSSHHLQTGQRSIASVRSLNSQSRHHHEIHPSSAAYHRCLATLKGHNTSYTSCLALSGKFLYTGSSDREIRSWNRTELDDPENSITNIALSGKGAVKSIVAQSDKLFSAHQDHKIRVWKIISNHETDPQEYTHVATLPTLVDRASKILIPKNHIQIRRHKKCTWVHHVDTVSALALSKDETLLYSVSWDRTIKIWRTRDFTCLESVTNAHDDAINAVAVSNDGYVYTGSADRRIKVWKKEEGEKKHTLVDTLEKHNSGINALALSSDGGVMYSGASDRSILVWEKDEEEEGKMKLVGALRGHTMSILCLGVVWDLVCSGSADRTIRIWRGIEKDYSCLAVLEGHRGAIKCITAAVDRCDSSEASFLVYSGSLDCDIKMWQIVVPVS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1010 400 MobiDBLite consensus disorder prediction 1 45 - -
Lele17g1010 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 221 252 - -
Lele17g1010 400 MobiDBLite consensus disorder prediction 8 34 - -
Lele17g1010 400 CDD WD40 53 394 - -
Lele17g1010 400 SUPERFAMILY WD40 repeat-like 52 395 IPR036322 GO:0005515
Lele17g1010 400 Gene3D - 168 397 IPR015943 GO:0005515
Lele17g1010 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 298 - -
Lele17g1010 400 Gene3D - 4 167 IPR015943 GO:0005515
Lele17g1010 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 261 IPR001680 GO:0005515
Lele17g1010 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 342 IPR001680 GO:0005515
Lele17g1010 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 178 209 - -
Lele17g1010 400 FunFam BnaA09g28200D protein 168 256 - -
Lele17g1010 400 SMART WD40_4 348 394 IPR001680 GO:0005515
Lele17g1010 400 SMART WD40_4 213 252 IPR001680 GO:0005515
Lele17g1010 400 SMART WD40_4 306 343 IPR001680 GO:0005515
Lele17g1010 400 SMART WD40_4 171 210 IPR001680 GO:0005515
Lele17g1010 400 SMART WD40_4 259 298 IPR001680 GO:0005515
Lele17g1010 400 SMART WD40_4 95 133 IPR001680 GO:0005515
Lele17g1010 400 SMART WD40_4 50 88 IPR001680 GO:0005515
Lele17g1010 400 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 396 IPR045182 -
Lele17g1010 400 Pfam WD domain, G-beta repeat 263 297 IPR001680 GO:0005515
Lele17g1010 400 Pfam WD domain, G-beta repeat 179 209 IPR001680 GO:0005515
Lele17g1010 400 Pfam WD domain, G-beta repeat 52 88 IPR001680 GO:0005515
Lele17g1010 400 Pfam WD domain, G-beta repeat 308 342 IPR001680 GO:0005515
Lele17g1010 400 Pfam WD domain, G-beta repeat 350 393 IPR001680 GO:0005515
Lele17g1010 400 Pfam WD domain, G-beta repeat 216 252 IPR001680 GO:0005515
Lele17g1010 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 298 IPR001680 GO:0005515
Lele17g1010 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 178 219 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1010 Lele-ChrLele17 20837998 20839200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1010 223 394 Acyl Lipid Metabolism Gene Families AT3G18860 28.652 4.71e-11 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1010 17 20837998 20839200 Lele21g1830 21 25857242 25859610 CCT
Lele17g1010 17 20837998 20839200 Lele22g1805 22 23168969 23171353 CCT
Lele17g1010 17 20837998 20839200 Lele23g0180 23 1151035 1153412 CCT
Lele17g1010 17 20837998 20839200 Lele24g1766 24 22822876 22825264 CCT
Lele17g1010 17 20837998 20839200 Lele19g0547 19 3173915 3175117 hybridization
Lele17g1010 17 20837998 20839200 Lele20g0903 20 15406727 15411140 hybridization