Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0547 ATGGAACATCACCGATCCTATGATGTCTCTTCTTCTTCCTCTTCCTCACACCATCTTCAAACAGGGCAACGAAGCATCGCTTCAGTACCTTCCCTGAACTCGCAATCTCGTCACCACCATGAAATCCATCCTTCTTCCGCCTCCTACCACCGGTGCCTCGCGACTCTCAAAGGCCACAACACTTCCTACACATCTTGTCTTGCGCTCTCTGGGAAATTCCTCTATACAGGTTCATCTAACAGAGAAATCAGATCATGGAATCGCACTGAGTTAGACGACCCTCAAAATTCCATCACCAACATAGCAGTTTCAGGGAACGGTTCAGTAAAATCCATCGTGGCTCAATCTAACAAACTTTTCAGTGCTCACCAAGACCACAAAATCAGAGTATGGAAGATCATCAGCAACCACGAAACCGACCAACAGGAGTACACGCATGTAGCCACACTTCCAACGTTGGGTGATCGAGCTTCCAAAATTTTGATCCCAAAAAACCATATCCAGATCAGAAGGCACAAGAAATGCACGTGGGTTCATCACGTGGACACCGTCTCTGCTCTAGCCTTGTCCAAGGACGAGACCTTGCTCTACTCAGTTTCATGGGACAGGACAATCAAAATATGGAGAACCAGAGATTTCACCTGTTTAGAATCAGTAACAAACGCACACGACGATGCCATAAACGCGGTCGCAGTCTCCAACGATGGGTACGTATACACAGGATCAGCAGATAGGAGAATCAAAGTGTGGAAGAAAGGAGAAGGAGAAAAGAAGCATACTTTGGTAGATACATTAGAGAAACACAATTCTGGGATCAATGCGTTGGCTCTGAGCAGTGATGGGGGTGTGATGTATTCTGGTGCGAGTGACAGATCGATACTGGTTTGGGAGAAAGATGAAGAAGAAGAAGAAGGGAAAATGAAGTTGGTGGGGGCATTAAGAGGGCACACGATGTCTATATTGTGTTTGGGAGTGGTTTGGGATTTGGTGTGTAGTGGTTCTGCGGATAGAACGATTAGGATATGGAGAGGGATAGAGAAAGACTATTCGTGTTTAGCAGTTTTGGAAGGGCATAGAGGAGCAATTAAGTGTATAACTGCGGCGGTTGATCGCTGTGATTCCTCGGAAGCTTCTTTTCTAGTGTATAGTGGAAGTTTGGACTGCGACATTAAGATGTGGCAGATTGTTGTTCCTGTTTCTTAG 1203 0.458 MEHHRSYDVSSSSSSSHHLQTGQRSIASVPSLNSQSRHHHEIHPSSASYHRCLATLKGHNTSYTSCLALSGKFLYTGSSNREIRSWNRTELDDPQNSITNIAVSGNGSVKSIVAQSNKLFSAHQDHKIRVWKIISNHETDQQEYTHVATLPTLGDRASKILIPKNHIQIRRHKKCTWVHHVDTVSALALSKDETLLYSVSWDRTIKIWRTRDFTCLESVTNAHDDAINAVAVSNDGYVYTGSADRRIKVWKKGEGEKKHTLVDTLEKHNSGINALALSSDGGVMYSGASDRSILVWEKDEEEEEGKMKLVGALRGHTMSILCLGVVWDLVCSGSADRTIRIWRGIEKDYSCLAVLEGHRGAIKCITAAVDRCDSSEASFLVYSGSLDCDIKMWQIVVPVS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0547 400 SUPERFAMILY WD40 repeat-like 51 395 IPR036322 GO:0005515
Lele19g0547 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 218 IPR001680 GO:0005515
Lele19g0547 400 FunFam BnaA09g28200D protein 167 255 - -
Lele19g0547 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 342 IPR001680 GO:0005515
Lele19g0547 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 251 - -
Lele19g0547 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 297 - -
Lele19g0547 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 260 IPR001680 GO:0005515
Lele19g0547 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 297 IPR001680 GO:0005515
Lele19g0547 400 MobiDBLite consensus disorder prediction 1 46 - -
Lele19g0547 400 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 12 396 IPR045182 -
Lele19g0547 400 CDD WD40 52 394 - -
Lele19g0547 400 Gene3D - 166 397 IPR015943 GO:0005515
Lele19g0547 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 208 - -
Lele19g0547 400 Pfam WD domain, G-beta repeat 178 208 IPR001680 GO:0005515
Lele19g0547 400 Pfam WD domain, G-beta repeat 262 296 IPR001680 GO:0005515
Lele19g0547 400 Pfam WD domain, G-beta repeat 96 132 IPR001680 GO:0005515
Lele19g0547 400 Pfam WD domain, G-beta repeat 308 342 IPR001680 GO:0005515
Lele19g0547 400 Pfam WD domain, G-beta repeat 51 87 IPR001680 GO:0005515
Lele19g0547 400 Pfam WD domain, G-beta repeat 350 393 IPR001680 GO:0005515
Lele19g0547 400 Pfam WD domain, G-beta repeat 215 251 IPR001680 GO:0005515
Lele19g0547 400 Gene3D - 33 163 IPR015943 GO:0005515
Lele19g0547 400 MobiDBLite consensus disorder prediction 8 35 - -
Lele19g0547 400 SMART WD40_4 348 394 IPR001680 GO:0005515
Lele19g0547 400 SMART WD40_4 49 87 IPR001680 GO:0005515
Lele19g0547 400 SMART WD40_4 306 343 IPR001680 GO:0005515
Lele19g0547 400 SMART WD40_4 212 251 IPR001680 GO:0005515
Lele19g0547 400 SMART WD40_4 170 209 IPR001680 GO:0005515
Lele19g0547 400 SMART WD40_4 94 132 IPR001680 GO:0005515
Lele19g0547 400 SMART WD40_4 258 297 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0547 Lele-ChrLele19 3173915 3175117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0547 222 394 Acyl Lipid Metabolism Gene Families AT3G18860 28.492 1.94e-10 60.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele19g0547 19 3173915 3175117 Lele21g1830 21 25857242 25859610 CCT
Lele19g0547 19 3173915 3175117 Lele22g1805 22 23168969 23171353 CCT
Lele19g0547 19 3173915 3175117 Lele23g0180 23 1151035 1153412 CCT
Lele19g0547 19 3173915 3175117 Lele24g1766 24 22822876 22825264 CCT
Lele17g1010 17 20837998 20839200 Lele19g0547 19 3173915 3175117 hybridization