Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0903 ATGCGAATCATGGAACATCATCGATCCTATGATGTCTCTTCTTCCTCCTCCTCGTCCTCACACCATCTTCAAACAGGGCAACGCAGCATCGCTTCAGTGCCTTCCCTGAACTCACGATCTCGTCACCACCATGAAATCCAGCCTTCTTCAGCCACCTACCACGGGTGTCTCGCAACTCTCAAGGGCCACAACACTTCTTACACATCTTGTCTTGCGCTCTCTGGGAAATTCCTCTACACAGGTTCATCTGACAGAGAAATCAGATCACGGAATCGCACCGAGTTAGACGACACTGAAAATTCGATCACCAACATAGCACTTTCAGGGAAGGGTGCGGTGAAATCCATCGTGGCTCAATCTGATAAGCTCTTCAGTGCTCACCAAGACCACAAAATCAGAGTATGGAAGATCGTCAGCAACCACGAAACCGACCAACGGGAGTACACACATGTAGCCACATTTCCAACGTTGGGTGATCGAGCTTCCAAAATTTTGATCCCAAAAAACCATGTCCAGATCAGAAGGCACAAGAAATGCACGTGGGTTCATCACGTAGACACAGTCTCTGCTCTAGCCTTGTCCAAAGACGAGACCTTGCTCTACTCAGCTTCATGGGACAGGACAGTGCAAATATGGAGAACCAGAGATTTCAACTGTTTAGATGATGGGGGAGTGAGTTATGATTTGGATGCAGAAGAAATGATGATATACATATCAGGGAAATCACTTGTCATACAACCCGACAGCCTTCTTCCGCCACCTACCACCGGTGCCTCACAACTCTCAAAGGCCACAACACTTCTTACACATCCTGTCTTGCGCTCTCTGGGAAATTCCTCTACACAGATCAGAAGGCACAAGAAATGCACGCGGGTTCATCACGTGGACACAGTATCTGCTCTAGCTATGTCCAAAGACGAGACCTTGCTCTACTCAGTTTCATGGGACAGGACTGTTTTCCCATGA 966 0.4803 MRIMEHHRSYDVSSSSSSSSHHLQTGQRSIASVPSLNSRSRHHHEIQPSSATYHGCLATLKGHNTSYTSCLALSGKFLYTGSSDREIRSRNRTELDDTENSITNIALSGKGAVKSIVAQSDKLFSAHQDHKIRVWKIVSNHETDQREYTHVATFPTLGDRASKILIPKNHVQIRRHKKCTWVHHVDTVSALALSKDETLLYSASWDRTVQIWRTRDFNCLDDGGVSYDLDAEEMMIYISGKSLVIQPDSLLPPPTTGASQLSKATTLLTHPVLRSLGNSSTQIRRHKKCTRVHHVDTVSALAMSKDETLLYSVSWDRTVFP 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0903 321 Pfam WD domain, G-beta repeat 56 88 IPR001680 GO:0005515
Lele20g0903 321 Pfam WD domain, G-beta repeat 182 212 IPR001680 GO:0005515
Lele20g0903 321 SUPERFAMILY WD40 repeat-like 50 319 IPR036322 GO:0005515
Lele20g0903 321 Gene3D - 171 320 IPR015943 GO:0005515
Lele20g0903 321 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 212 - -
Lele20g0903 321 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 271 319 IPR045182 -
Lele20g0903 321 MobiDBLite consensus disorder prediction 10 37 - -
Lele20g0903 321 Gene3D - 8 168 IPR015943 GO:0005515
Lele20g0903 321 MobiDBLite consensus disorder prediction 1 47 - -
Lele20g0903 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 222 IPR001680 GO:0005515
Lele20g0903 321 SMART WD40_4 98 136 IPR001680 GO:0005515
Lele20g0903 321 SMART WD40_4 285 321 IPR001680 GO:0005515
Lele20g0903 321 SMART WD40_4 53 91 IPR001680 GO:0005515
Lele20g0903 321 SMART WD40_4 174 213 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0903 Lele-ChrLele20 15406727 15411140 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele20g0903 20 15406727 15411140 Lele21g1830 21 25857242 25859610 CCT
Lele20g0903 20 15406727 15411140 Lele22g1805 22 23168969 23171353 CCT
Lele20g0903 20 15406727 15411140 Lele23g0180 23 1151035 1153412 CCT
Lele20g0903 20 15406727 15411140 Lele24g1766 24 22822876 22825264 CCT
Lele17g1010 17 20837998 20839200 Lele20g0903 20 15406727 15411140 hybridization