Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0532 ATGCGCTCAGGAGGTTGTGCATTACAGCAGACCCTCACATCGGAGGCTGCATCTGTGTTGAAGCATTCTCTGGGCTTGGCTCGCAGGAGGGGCCATGCCCAGGTCACTCCACTCCACGTGGCAGCCACCTTGCTCAGCCTTAGAGCTAGCTCCTTCAGAAGGGCTTGTCTCAAATCTCATCCTCATCACCAAACTTCTCCACATTCACATCATGCTCTCCACGGCAGAGCCCTTGAGCTCTGCTTCAATGTGGCTCTCAACAGGCTTCCAACCATACCAACTCCAAATCTGCTTCACGCCCAGCAGCCTTCTCTTTCAAATGCTCTCATTGCTGCTCTCAAAAGAGCCCAAGCTCACCAGAGAAGGGGTTGTATAGAACAACAGAATCAGCAGCCACTTTTGACCATTAAGGTAGAGCTTGAACAGCTTGTTATATCTATTCTTGATGACCCTAGTGTTAGCAGGGTCATGAGAGAGGCTGGGTTCTCTAGTACTGCTGTGAAGAGCAGTATAGAGGACTCTTCAGTTTCGCCTCCTTGTTCCGTTTTCCAGTGTTACAGCACTTCTGGAGGTGTCTTTTCTTCTCCTTGCTCTCCTTCACCTAGTGAAAACCAGAGGGAAACAATCAATCCCAACAGTTACAGGCACACCCACTTCTACACTGCTCCTGAGTACTACAACACAGTTCTTTTCTCTCCTCAAAAGAGAACCCCAGTGTACCCTATCACTGAACCAGCTTCATCTAAGGAAGACATCCAGTTGGTTTTACATGTGCTCTTGAGGAAGAAGAAGAGGAACGCTGTGATAGTTGGGGATTCTGTGTCCATCACTGAGGGCCTTGTGGGAGAGTTGATCGGAAGATTAGACAAAGGAGAGGTTCCTGATGAGTTGAAGTCAACCCGTTTCATCAAGTTTCATATAGCACCAGTTTCCTTGAGGTTCATGAAGAGAGATGAAGTTGAAATGAACCTCTTGGAGCTGAAAAGAAAGGTGGATTCCACTGCATCAGGAAGAGGTGGTGCCGTTATTTACATTGGAGATCTGAAATGGACAGAGGTGGCAACTTTCTTTAGTGAAAAAGAGAAGGGAGGAGAAGCATCAGGATATAACCCAGTGGATCATCTAATTGCAGAAATAGGAAAGTTGTTCTCTGACAATGGAAGCTCATCAAATGCTAAGGTATGGCTGATGGCAACTGCAAGTTACCAAACATACATGAGATGTCAAATGAGGCAGCCTCCCCTTGAGACCCAGTGGTCTTTTCAGGCAGTTCTTGTTCCTTCAGGTGGACTTGGCTTGAGCCTCCATGCTTCCAGTCTTCTTGAGTCAAAAATGACCAATTCCCAGAACTCATCTCATATGCTGGAAAAGAAACTCTTCAATAATAGGGAGGATCAGGATAAGCTCACTTGCTGTGAAGAATGTGCCTCTAATTATGAAAAGGATGCTCAAATGTTCAAGCCAGGCCAGACCAAATTATTTCCTTCCTGGCTTCAGTCTCATAGCATTGAAGCCCATCAGAAGGAGGAATTAACCCAGTTGAGAAGAAAATGGAATAGACTATGCCAGTTTCTTCACCAAAACAAGCATTCCCAGAACCACTGGAACAACAGTGTATACAGCAATCACAGTCCAACTGGGAAGATTTATCCCTATAATTCTTCATATCCCATGTGGTCAAAGCAAGCAAGTATTTTCCCAGATTCAAGTTGTATATCATTTGCAGACTCTGCTGTTAATTCCACTCATAGCTTCAATCTTGCACCAAAATTTCGACGCCAACGATCATGCACCATTGAGTTCAATTTTAGCAATGGAACTCAGAAACAGCAGCAAGCAACAGCAGAAGAACCGAGCTTGGAATCTCTCAAGGGCAAGGAAGGTAAAGAAGTAAAGATTACTCTTGCTCTTGGGAATTCCCAATTCGGTGGTTCAGAGCAAAGGGAGGAAAATATAACTACTGCTACAACACAGCGAAGAGCTCATGTTTGTAAACTATTGCAGGAGAATATGCCATGGCAATCTGACACAATTCCTTCAATAGCAGAGGCTTTAGTTGTTGATTCCCAATCAAAAAGGCAAAACTCAACTTGGTTGGTTTTGAATGGCAACGACTCTGTAGGGAAAATAAGGTTGGCTCGTGCAATTGCCGAATCGTTCTTTGGTTCAGATGATCTGCTTCTTCAACTGGACATGAAGAAGGAGACCTCAGAATCTCCATCATCTGAAGCGCTGAGGAGAGCTTTGGGAGCCCATGAAGAACTCGTCGTTCTAATCGAAAACATTAATTTCGCTGACAGAGATTTCAAGAAATTCCTCGGAGACATTTATGAAACAGGAAAGTTCGGCCAGGCAATATTCATAGTGACGACCGGTGGCTCAACGATAAACGAAGAAGAGAATCAGGACTCAGTGATGCAATTAACATTGCAGGTCAGCGAAACCAATCCAAACTTGGAGACACATTGCATTGTGGGCCAAAAGCGAAAAGAAGAATTCGATCTGTTCGCCAAAACAAAAAACCCAAGAACAGGAGACAAGGAAGTTGAATCGAACAGAAAGAAAGACTACTCGAGACAGTCAAGCTTCAACACCCTTGATCTGAACATGAAAGCCAATGAAGAAGACGGCGACGACTGCGATGGTGAGAGTAGCGAAAGCCCCATTTCAAGCGATTTGACCCTAGAAACCATGCCGGATTCCACAAACCCAAATGGGTTTCTGGACTCCATCAAGAACCAATTCGAGTTCAATCGAAGTCGAGCTCGAGACAGAGAAATGGCAGAGCAATTCACGACGAGAATCAAATGGTGCTTTGAAGAACTTTACGGGAAGCAAAAAGTGAGGAATTTCAGTATAGAAGAGAAGGTGATAGAGGAAGTAGTTGGTGGGTGTGGTAGTTTTACTAACAGAGTGTTTGAGAAATGGCTAAAAGACATTTTTCAAAGAAGCTTAGAAACAGGAAAGGAGAAAGAGGAGGGTATACGTTTTAGACTTTGTTGGGGTGGAAACGGTAAAGCTAAAGGAGGTAAAGGAGGGGAAATTAGAGTTTTGGATAGTGGAGAAGGGGGATTCATGAGTTCATGTCTGCCAAAGAGCATCAAAGTTAACTACTTGATGGATTGA 3126 0.4447 MRSGGCALQQTLTSEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRASSFRRACLKSHPHHQTSPHSHHALHGRALELCFNVALNRLPTIPTPNLLHAQQPSLSNALIAALKRAQAHQRRGCIEQQNQQPLLTIKVELEQLVISILDDPSVSRVMREAGFSSTAVKSSIEDSSVSPPCSVFQCYSTSGGVFSSPCSPSPSENQRETINPNSYRHTHFYTAPEYYNTVLFSPQKRTPVYPITEPASSKEDIQLVLHVLLRKKKRNAVIVGDSVSITEGLVGELIGRLDKGEVPDELKSTRFIKFHIAPVSLRFMKRDEVEMNLLELKRKVDSTASGRGGAVIYIGDLKWTEVATFFSEKEKGGEASGYNPVDHLIAEIGKLFSDNGSSSNAKVWLMATASYQTYMRCQMRQPPLETQWSFQAVLVPSGGLGLSLHASSLLESKMTNSQNSSHMLEKKLFNNREDQDKLTCCEECASNYEKDAQMFKPGQTKLFPSWLQSHSIEAHQKEELTQLRRKWNRLCQFLHQNKHSQNHWNNSVYSNHSPTGKIYPYNSSYPMWSKQASIFPDSSCISFADSAVNSTHSFNLAPKFRRQRSCTIEFNFSNGTQKQQQATAEEPSLESLKGKEGKEVKITLALGNSQFGGSEQREENITTATTQRRAHVCKLLQENMPWQSDTIPSIAEALVVDSQSKRQNSTWLVLNGNDSVGKIRLARAIAESFFGSDDLLLQLDMKKETSESPSSEALRRALGAHEELVVLIENINFADRDFKKFLGDIYETGKFGQAIFIVTTGGSTINEEENQDSVMQLTLQVSETNPNLETHCIVGQKRKEEFDLFAKTKNPRTGDKEVESNRKKDYSRQSSFNTLDLNMKANEEDGDDCDGESSESPISSDLTLETMPDSTNPNGFLDSIKNQFEFNRSRARDREMAEQFTTRIKWCFEELYGKQKVRNFSIEEKVIEEVVGGCGSFTNRVFEKWLKDIFQRSLETGKEKEEGIRFRLCWGGNGKAKGGKGGEIRVLDSGEGGFMSSCLPKSIKVNYLMD 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0532 1041 Pfam Clp amino terminal domain, pathogenicity island component 26 46 IPR004176 -
Lele17g0532 1041 Pfam Clp amino terminal domain, pathogenicity island component 138 173 IPR004176 -
Lele17g0532 1041 Gene3D - 644 839 IPR027417 -
Lele17g0532 1041 MobiDBLite consensus disorder prediction 837 857 - -
Lele17g0532 1041 Gene3D - 9 175 IPR036628 -
Lele17g0532 1041 Gene3D - 239 428 IPR027417 -
Lele17g0532 1041 ProSiteProfiles Clp repeat (R) domain profile. 8 179 IPR004176 -
Lele17g0532 1041 SUPERFAMILY Double Clp-N motif 12 172 IPR036628 -
Lele17g0532 1041 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 994 - -
Lele17g0532 1041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 662 793 IPR027417 -
Lele17g0532 1041 MobiDBLite consensus disorder prediction 837 898 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0532 Lele-ChrLele17 17477859 17481455 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0532 17 17477859 17481455 Lele21g0897 21 6016891 6021406 CCT
Lele17g0532 17 17477859 17481455 Lele22g0898 22 6067851 6072200 CCT
Lele17g0532 17 17477859 17481455 Lele23g1154 23 17098558 17103117 CCT
Lele17g0532 17 17477859 17481455 Lele24g0870 24 5949342 5954013 CCT
Lele17g0532 17 17477859 17481455 Lele19g1009 19 6418733 6422336 hybridization
Lele17g0532 17 17477859 17481455 Lele20g0439 20 12063375 12066858 hybridization