Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0897 ATGCCGCCGGCTGCAGTGAATCCACTAATGCCAGAGTCTTTGTTGGTTCCATCCTCGAGCTCCGATTCTGTTTCTGAAGGATCAACGCCGGAGAATCGGCGTTTCGGAGATCTTAGAGGTTTGCAGTGGCGTATAAATCTAGGGGTTTTGCCGTCTTCTGCTTCCATTGATTATCTTCGTCGGGCCACTGCTGATTCTCGAAGAAGGTATGCTTGTTTGAGAAGGCACCTTCTGGCTGATCCACATACTCCAAAGCGTGGAAGTAATTGTCCCGATCCAGTCATAGATAATCCACTTTCCCAAAATCCAGATAGTACATGGAGTCGTTTTTTTCGTAGTGCAGAGCTGGAGCGAATGGTTGATCAGGATTTGTCACGTTTATATCCAGAGCATGGGAGCTATTTCCAAACACCAGGATGCCAAGGCATGTTGAGACGAATTTTATTATTATGGTGTCTTAAGCATCCAGAATGTGGTTATAGACAAGGAATGCATGAATTATTGGCTCCATTGCTATATGTTCTCCAAGTTGATGTGGAGTGTCTTTCAGAAACTCGAAAGCATTATGAAGATCATTTCACTGACAGATTTGATGGCCTTTTATGTCAAGAGAATGATCTTTCTTACAGTTTCGATTTTAGAAAATCCCCAGATATGATGGAGGATGAAATTGGTTCCCATGGAAATGCTAAGAAAGTCAGGAATATTGAGGAGCTTGATCCTGTGATACAGGACATTGTATTGTTAAGTGATACTTATGGTGCTGAAGGTGAACTGGGCATTGTTTTATCTGAGAAATTCATCGAGCATGATGCCTACTGTATGTTTGATGCTTTATTGAGTGGGGCCCATGGTCTAGTTGCAATGGCAGATTTTTTCTCATCTTCCCCTGCAGTTGGGTCCCATACAGGCTTATCTCCTGTAATTGAAGCTTCTAGGGCACTTTATTGTTTGCTGTCCCTTGTGGATTCACCCCTGCATAGTCATCTTGTAGATCTTGGGGTTGAACCCCAGTACTTTGCGCTCCGTTGGTTGAGAGTTCTATTTGGACGGGAATTTTCACTTGACACCCTTCTGATAATCTGGGATGAGATCTTTGCATCAGATAACAGCAAAGTGGAAAAAGTTCCTGATGATGACATAGACTCTGGGATTGGGATCTTATATTCCCCTCGGGGAGCATTTATCTCAGCCATGGCTGTAGCAATGATTCTTCATTTAAGATCTTCACTACTTGCTACGGAAAATGCTACAAGCTGTCTTCAGAGATTATTAAACTTCCCTCAGAAAACCAACATTAAAAAACTGCTAGAGAAGGCTAAATCTTTGCAGGCTCTCGCTTTAAGTGCTGACATTTCAATACCACCATCATTTTTTGATGTTTATAACCAAAGCAAATCACCAATTACAAGATCCCTGACCCTTCCATCAGAAACTGTTTCTCCGAGAACTCCCTTGAATCTTTTGCCTGATAGCTATTGGGAGGAAAAATGGAGAGTTGTCCACAAAGCTGAAGAAACTAAGAAAGATGTGGCAGATAAACAGGTTCCTACCCGGAAAAAGGGATGGACAGAAAAGATGAAATTCAGTCTCAAAAGAACAGAATCTGACCCATCTCCATCTAAGGTTCAGGGTGGCAAGACTGAATCTAAAGCATCTGTGAGGCGCAGTTTGCTGGAAGATCTTAATAGGGCACTTGGCTTAGAGGAAGATACGGAAAAAACGCACTGCCTTGAAACATCAAATCGACAGGATAATATTTCTGAAAGAGTTGAAGGAGAGGATCAAGATGGTGGCTGTAAAGACAATAGTTGCACTACAGAGGATAGATTTCTGAGTGGAAATACTGGCAGCGAGGAAAACTCATCTTCATTTACAGATCCAATCAGTCCTCCTAATGAAGTCAATGATCATGAAAATTACTCAGAGAAAAGTAGTGTTGCATCTAATTTATCTTTTAATGAAAGCAATGAAGATTCACTTTGTGGTTCCAATGTTACACCTCTTCCTGTCTCTTCTATTCCTGAGAACATGTCTCAGATCTCAGGATGCAATAATGATACTACGGGAAATTCAGCAACAGTTTCTAAGGAGAGTAAAGTGAACAAAATCGGGTGGTTTTGGACGTTTGGTCGAAATAACAATGAGGTTATTACTGAGAAAGGAGGAGATGCTTCTGAAGCTACAAAGGCTGGCAACAGTTCTAGTAAAAGCAATACAACAGCTTCAGCTACATACAGTAAAAGTAGTTCTGGTAGTTGCAAAGCCGATTCTGTCGACCAGAATGTTATGGGAACTTTGAGGAATCTTGGGCAGTCCATGCTGGAGAATATTCAGGTGATTGAGTCTGTTTTCCAGCAAGACAAAGGGCAGGGGACTTCATTGGAGAGCTTCTCCAAAAATATTCTGGTTGGCAAAGGGCAGGTTACTGCTGTGACAGCTCTAAAGGAGCTTAGGAAAATCAGCAATCTTTTGTCTGAGATGTGA 2487 0.419 MPPAAVNPLMPESLLVPSSSSDSVSEGSTPENRRFGDLRGLQWRINLGVLPSSASIDYLRRATADSRRRYACLRRHLLADPHTPKRGSNCPDPVIDNPLSQNPDSTWSRFFRSAELERMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLKHPECGYRQGMHELLAPLLYVLQVDVECLSETRKHYEDHFTDRFDGLLCQENDLSYSFDFRKSPDMMEDEIGSHGNAKKVRNIEELDPVIQDIVLLSDTYGAEGELGIVLSEKFIEHDAYCMFDALLSGAHGLVAMADFFSSSPAVGSHTGLSPVIEASRALYCLLSLVDSPLHSHLVDLGVEPQYFALRWLRVLFGREFSLDTLLIIWDEIFASDNSKVEKVPDDDIDSGIGILYSPRGAFISAMAVAMILHLRSSLLATENATSCLQRLLNFPQKTNIKKLLEKAKSLQALALSADISIPPSFFDVYNQSKSPITRSLTLPSETVSPRTPLNLLPDSYWEEKWRVVHKAEETKKDVADKQVPTRKKGWTEKMKFSLKRTESDPSPSKVQGGKTESKASVRRSLLEDLNRALGLEEDTEKTHCLETSNRQDNISERVEGEDQDGGCKDNSCTTEDRFLSGNTGSEENSSSFTDPISPPNEVNDHENYSEKSSVASNLSFNESNEDSLCGSNVTPLPVSSIPENMSQISGCNNDTTGNSATVSKESKVNKIGWFWTFGRNNNEVITEKGGDASEATKAGNSSSKSNTTASATYSKSSSGSCKADSVDQNVMGTLRNLGQSMLENIQVIESVFQQDKGQGTSLESFSKNILVGKGQVTAVTALKELRKISNLLSEM 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0897 828 MobiDBLite consensus disorder prediction 1 33 - -
Lele21g0897 828 Pfam Rab-GTPase-TBC domain 117 201 IPR000195 -
Lele21g0897 828 Pfam Rab-GTPase-TBC domain 308 369 IPR000195 -
Lele21g0897 828 ProSiteProfiles TBC/rab GAP domain profile. 33 369 IPR000195 -
Lele21g0897 828 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 33 440 - -
Lele21g0897 828 Gene3D - 308 451 - -
Lele21g0897 828 MobiDBLite consensus disorder prediction 606 649 - -
Lele21g0897 828 MobiDBLite consensus disorder prediction 13 30 - -
Lele21g0897 828 MobiDBLite consensus disorder prediction 723 758 - -
Lele21g0897 828 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 101 285 - -
Lele21g0897 828 SMART tbc_4 24 415 IPR000195 -
Lele21g0897 828 MobiDBLite consensus disorder prediction 536 551 - -
Lele21g0897 828 MobiDBLite consensus disorder prediction 728 758 - -
Lele21g0897 828 MobiDBLite consensus disorder prediction 576 604 - -
Lele21g0897 828 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 37 329 IPR035969 -
Lele21g0897 828 MobiDBLite consensus disorder prediction 507 555 - -
Lele21g0897 828 FunFam TBC1 domain family member 5 308 452 - -
Lele21g0897 828 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 307 444 IPR035969 -
Lele21g0897 828 MobiDBLite consensus disorder prediction 576 649 - -
Lele21g0897 828 MobiDBLite consensus disorder prediction 507 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0897 Lele-ChrLele21 6016891 6021406 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0979 18 6467798 6479776 Lele21g0897 21 6016891 6021406 CCT
Lele19g1010 19 6429295 6440308 Lele21g0897 21 6016891 6021406 CCT
Lele20g0438 20 12041932 12058851 Lele21g0897 21 6016891 6021406 CCT
Lele17g0532 17 17477859 17481455 Lele21g0897 21 6016891 6021406 CCT
Lele21g0897 21 6016891 6021406 Lele21g0897 21 6016891 6021406 ECH
Lele21g0897 21 6016891 6021406 Lele23g1154 23 17098558 17103117 hybridization
Lele21g0897 21 6016891 6021406 Lele24g0870 24 5949342 5954013 hybridization