Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele24g0870 | ATGCCAGAATCTTTGTCGGTGCCATCGTCGAGCTCCGGCTTTGTTTCTCAAGGATCTGCGCCGGAGAATCGGCGTTTCGGGGATCTTAGAGGTTTGCAGTGGCGTATAAATCTCGGGGTTTTGCCATCTTCTGCTTCCATTGATTATCTTCGTCGGGCCACTGCTGATTGTCGAAGGAGGTATGCTAGTTTGAGAAGGCACCTCCTGGTTGATCCACATACTACAAAGCGTGGAAGTAACTCCCGTGATCTAGTCATAGATAATCCACTTTCACAAAATCCAGATAGTACATGGAGTCGCTTTTTTCGTACTGCTGAGTTGGAGCGAATGGTTGATCAGGATTTGTCACGTTTATATCCAGAACATGGGAGCTATTTCCAAACACCAGGATGCCAAGGCATGTTGAGACGAATTTTATTATTGTGGTGTCTTAAACATCCAGAATGCGGTTATAGACAAGGAATGCATGAATTATTGGCTCCATTGCTATATGTTCTCCAAGTTGATGTGGAGCGCCTTTCAGAAATTCGAAAACTTTATGAAGATCACTTCACTGACAGATTTGATGGCCTTACATGTCAAGAGAATGATCTTTCTTACGGTTTTGATTTTAGAAAATCTCCAGATATGATGGAGGATGAAATTGGTTCCCATGGAAATGCTAAGAAAGTCAGGAATCTTGAGGAGCTTGATCCTGTGATACAGAACATTGTATTGTTAAGTGATACTTATGGTGCTGAAGGTGAGCTGGGTATTGTTTTATCTGAGAAATTCATCGAACATGATGCCTACTGTATGTTTGATGCTTTATTGAGTGGGGCCCATGGTCTAGTTGCAATGGCAGATTTTTTCTCATCCTCCCCTGCAGTTGGTTCCCATACAGGCTTATCTCCTGTAATAGAAGCTTCTAGGGCATTGTATTGTTTGCTGTCCTTTGTGGATTCACCTCTGCATAGTCATCTTGTAGATCTTGGGGTTGAACCCCAGTACTTCGCTCTCCGTTGGTTGAGAGTTCTGTTTGGACGGGAATTTTCACTTGACAACCTTTTGATAATCTGGGATGAGATATTTGCATCAGATAACAGCGAAATGGAAAAAGGTCCTGATGATTACATAGACTCTGGTATTAGGATCTTACATTCTCCTCGTGGGGCATTTATCTCAGCTATGGCTGTAACAATGATACTTCATTTGAGATCTTCACTACTTGCTACTGAAAATGCTACAACCTGTCTTCAGAGATTATTAAACTTCCCTCAGAACACCAACATTAAAAAATTGCTAGAGAAGGCTAAATCTTTGCAGGCTCTTGCGTTAAGCGCTGACATTTCAATACCACCATTTTTTTATGTTTATAACCAAAACAAATCACCAATTACAAGATCCCTGACCCTTCCATCAGAAACTGTTTCTCCGAGAACTCCCCTGAATCTGTTGCCTGATAGCTACTGGGAAGAAAAATGGAGAGTTGTCCACAAAGCTGAAGAAACGAAGAAAGATAGGGCAGATAAACAGGTTCCTACCTGGAAAAAGGGATGGACAGAGAAGATGAAGTTCAATCTCAAAAGAACAGAATCTGACCCATCTCCATCTAAGGTTCAGGGTGGCAAGAGTGAATCTAAAGCATCTGTTAGGCGCAGTTTGCTGGAAGATCTGAATAGGGCACTTGGCTTAGATGAAGATACGGAAAAAATGCACTGCGTTGAAACATCAAATCAACAGGATAATGTTTCTGTAAGAGTTGATGGGGAAGATCAAGATGGTGGCCGTAAAGACGACTGTTGCACTGCTGAGGATAGATTTCTGAGTGGAAATACTGGCAGCGAGGAAAACTCATCTTCATTTACAGATCCAATCAGTTCTCCTAATGAAGTCAATGACCATGAAAATTACTCAGAGAAAAGTAGTGTTGCATCTAATTTATCTTTTAATGAAAGCAATGAAGATTCACTTTGTGGTTCCAATGTTACACCTCTTCCCATCTCTTCTATTCCAGAGAACATGTCTCAGATCTCAGGATTCAACAATGATATCACTGGAAATTCAGCAATAGTTTCTAAGGAGAGTAAAGTGAACAAAATTGGGTGGTTTTGGAAGTTTGGTCGAAATAACAATGAGGTTATAACTGTGAAAGTAGGGGATGCTTCTGAAGCCACAAAAGCTGGCAACAGTTCTAGTAAAAGCAATACAACAGCTTCAGCTACATGCAGTAATAGTAGTTCTGTTAGTTGCAAAGGCGATTCTCTCGACCAGAATGTTATGGAAACTTTGAGGAATCTTGGGCAGTCCATGCTGGAGAATATTCAGGTGATTGAGTCTGTTTTCCAGCAAGACAAAGGACAAGGGACTTCATTGGAGAGCTTCTCCAAAAATATTCTGGTTGGCAAAGGGCAGGTTACTGCTATGACAGCTCTAAAGGAGCTTAGAAAAATCAGCAATCTTTTGTCCGAGATGTGA | 2457 | 0.4135 | MPESLSVPSSSSGFVSQGSAPENRRFGDLRGLQWRINLGVLPSSASIDYLRRATADCRRRYASLRRHLLVDPHTTKRGSNSRDLVIDNPLSQNPDSTWSRFFRTAELERMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLKHPECGYRQGMHELLAPLLYVLQVDVERLSEIRKLYEDHFTDRFDGLTCQENDLSYGFDFRKSPDMMEDEIGSHGNAKKVRNLEELDPVIQNIVLLSDTYGAEGELGIVLSEKFIEHDAYCMFDALLSGAHGLVAMADFFSSSPAVGSHTGLSPVIEASRALYCLLSFVDSPLHSHLVDLGVEPQYFALRWLRVLFGREFSLDNLLIIWDEIFASDNSEMEKGPDDYIDSGIRILHSPRGAFISAMAVTMILHLRSSLLATENATTCLQRLLNFPQNTNIKKLLEKAKSLQALALSADISIPPFFYVYNQNKSPITRSLTLPSETVSPRTPLNLLPDSYWEEKWRVVHKAEETKKDRADKQVPTWKKGWTEKMKFNLKRTESDPSPSKVQGGKSESKASVRRSLLEDLNRALGLDEDTEKMHCVETSNQQDNVSVRVDGEDQDGGRKDDCCTAEDRFLSGNTGSEENSSSFTDPISSPNEVNDHENYSEKSSVASNLSFNESNEDSLCGSNVTPLPISSIPENMSQISGFNNDITGNSAIVSKESKVNKIGWFWKFGRNNNEVITVKVGDASEATKAGNSSSKSNTTASATCSNSSSVSCKGDSLDQNVMETLRNLGQSMLENIQVIESVFQQDKGQGTSLESFSKNILVGKGQVTAMTALKELRKISNLLSEM | 818 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele24g0870 | 818 | MobiDBLite | consensus disorder prediction | 568 | 639 | - | - | |
| Lele24g0870 | 818 | MobiDBLite | consensus disorder prediction | 717 | 746 | - | - | |
| Lele24g0870 | 818 | SUPERFAMILY | Ypt/Rab-GAP domain of gyp1p | 298 | 435 | IPR035969 | - | |
| Lele24g0870 | 818 | MobiDBLite | consensus disorder prediction | 601 | 639 | - | - | |
| Lele24g0870 | 818 | Pfam | Rab-GTPase-TBC domain | 108 | 168 | IPR000195 | - | |
| Lele24g0870 | 818 | Pfam | Rab-GTPase-TBC domain | 299 | 360 | IPR000195 | - | |
| Lele24g0870 | 818 | Gene3D | - | 299 | 443 | - | - | |
| Lele24g0870 | 818 | ProSiteProfiles | TBC/rab GAP domain profile. | 24 | 360 | IPR000195 | - | |
| Lele24g0870 | 818 | MobiDBLite | consensus disorder prediction | 519 | 544 | - | - | |
| Lele24g0870 | 818 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| Lele24g0870 | 818 | Gene3D | putative rabgap domain of human tbc1 domain family member 14 like domains | 92 | 276 | - | - | |
| Lele24g0870 | 818 | MobiDBLite | consensus disorder prediction | 580 | 598 | - | - | |
| Lele24g0870 | 818 | SUPERFAMILY | Ypt/Rab-GAP domain of gyp1p | 28 | 320 | IPR035969 | - | |
| Lele24g0870 | 818 | SMART | tbc_4 | 15 | 390 | IPR000195 | - | |
| Lele24g0870 | 818 | FunFam | TBC1 domain family member 5 | 299 | 443 | - | - | |
| Lele24g0870 | 818 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Lele24g0870 | 818 | MobiDBLite | consensus disorder prediction | 526 | 541 | - | - | |
| Lele24g0870 | 818 | PANTHER | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN | 25 | 431 | - | - | |
| Lele24g0870 | 818 | MobiDBLite | consensus disorder prediction | 718 | 746 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele24g0870 | Lele-ChrLele24 | 5949342 | 5954013 | Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele18g0979 | 18 | 6467798 | 6479776 | Lele24g0870 | 24 | 5949342 | 5954013 | CCT | |
| Lele19g1010 | 19 | 6429295 | 6440308 | Lele24g0870 | 24 | 5949342 | 5954013 | CCT | |
| Lele20g0438 | 20 | 12041932 | 12058851 | Lele24g0870 | 24 | 5949342 | 5954013 | CCT | |
| Lele17g0532 | 17 | 17477859 | 17481455 | Lele24g0870 | 24 | 5949342 | 5954013 | CCT | |
| Lele24g0870 | 24 | 5949342 | 5954013 | Lele24g0870 | 24 | 5949342 | 5954013 | ECH | |
| Lele21g0897 | 21 | 6016891 | 6021406 | Lele24g0870 | 24 | 5949342 | 5954013 | hybridization | |
| Lele22g0898 | 22 | 6067851 | 6072200 | Lele24g0870 | 24 | 5949342 | 5954013 | hybridization |