Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0898 ATGCCGCCGGCTGTTGTGAATCCACTAATGCCAGAATCTTTTTCGGTGCCATCGTCGAGCTCCGGCTCTGTTTCTCAAGGATCTGCGCCGGAGAATCGGCGTTTCGGAGATCTTAGAGGTTTGCAGTGGCGTATAAATCTCGGGGTTTTTCCATCTTCTGCTTCCATTGATTATCTTCGTCGGGCCACTGCTGATTGTCGAAGGAGGTATGCTAGTTTGAGAAGGCACCTCCTGGTTGATCCACATACTTCAAAGCGTGGAAGTAACTCCCCTGATCTAGTCATAGATAATCCTCTTTCACAAAATCCAGATAGTACATGGAGTCGCTTTTTTCGTAGTGCTGAGCTGGAGCGAATGGTTGATCAAGATTTGTCACGTTTATATCCAGAACATGGGAGCTATTTCCAAACACCAGGATGCCAAGGCATGTTGAGACGAATTTTATCATTGTGGTGTCTTAAGCATCCAGAATGTGGTTATAGACAAGGAATGCATGAATTATTGGCTCCATTGCTATATGTTCTCCAAGTTGATGTGGAGCGTCTTTCAGAAATTCGAAAACTTTATGAAGATCACTTCACTGACAGATTTGATGGCCTTATTTGTCAAGAGAATGATCTTTCTTACAGTTTTGATTTTAGAAAATCTCCAGATATGATGGAGGATGAAATTGGTTCCCATGGAAATGCTAAGAAAGTCAGCAATCTTGAGGAGCTTGATCCTGTGATACAGAACATTGTATTGTTAAGTGATACTTATGGTGCTGAAGGTGAGCTGGGCATTGTTTTATCTGAGAAATTCATCGAACATGATGCCTACTGTATGTTTGATGCTTTATTGAGTGGGGCCCATGGTCTAGTTGCAATGGCAGATTTTTTCTCATCCTCCCCTGCAGTTGGTTCCTATACAGGCTTATCTCCTGTAATAGAAGCTTCTAGGGCATTGTATTGTTTGCTGTCCTTTGTGGATTCACCTCTGCATAGTCATCTTGTAGATCTTGGGGTTGAACCCCAGTACTTCGCTCTCCGTTGGTTGAGAGTTCTATTTGGACGGGAATTTTCACTTGACAACCTTTTGATAATCTGGGATGAGATCTTTGCATCAGATAACAGCGAAGTGGAAAAAGGTCCTGATGATTACATAGACTCTGGTATTAGGATCTTACATTCTCCTCGTGGGGCATTTATCTCGGCTATGGCTGTAGCAATGATACTTCATTTGAGATCTTCACTACTTGCTACTGAAAATGCTACAACCTGTCTTCAGAGATTATTAAACTTCCCTCAGAACACCAACATTAAAAACCTGCTAGAGAAGGCTAAATCTTTGCAGGCTCTTGCGTTAAGCGCTGACATTTCAATACCACCATTTTTTGATGTTTATAACCAAAGCAAATCACCAATTACAAGATCCCTGACCCTTCCGTCAGAAACTTTATCTCCGAGAACTCCCCTGAATCTGTTGCCTGATAGCTACTGGGAAGAAAAATGGAGAGTTGTCCACAAAGCTGAAGAAACGAAGAAAGATGGGGCAGATAAACAGGTTCCTACCTGGAAAAAGGGATGGACAGAAAAGATGAAGTTCAGTCTCAAAAGAGCAGAATCTGACCCATCTCCATCTAAGGTTCAGGGTGGCAAGAGTGAATCTAAAGCATCTGTTAGGCGCAGTTTGCTGGAAGATCTGAATGGGGCACTTGGCTTAGATGAAGATACGGAAAAAATGCACTGCGTTGAAACATCAAATCAACAGGATAATGTTTCTGTAAGAGTTGATGGGGAGGATCAAGATGGTGGCCGTAAAGACAACTGTTGCACTGTTGAGGATAGATTTCTGAGTGGAAATACTGGCAGCGAGGAAAACTCATCTTCATTTACAGATCCAATCAGTCCTCCTAATGAAGTCAATGACCATGAAAATTACTCGGAGAAAAGTAGTGTTGCATCTAATTTATCTTTTAATGAAAGCAATGAAGATTCACTTTGTGGTTCCAATGTTACAACTCTTCCCATCTCTTCTATTCCTGAGAACATGTCTCAGATCTCAGGATTCAATAATGATATCACTGGAAATTCAGCAATAGTTTCTAAGGAGAGTAAAGTGAACAAAATTGGGTGGTTTTGGAAGTTTGGTCGAAATGACAATGAGGTTGTAACTGAGAAAGGAGGGGATGCTTCTGAAGCCACAAAAGCTGGCAACAGTTCTAGTAAAAGCAATACAACAGCTTCAGCTACATGCAGTAAAAGTAGTTCTGTTAGTTGCAAAGGCGATTCTCTCGACCAGAATGTTATGGGAACTTTGAGGAATCTTGGGCAGTCCATGCTGGAGAATATTCAGGTGATTGAGTCTGTTTTCCAGCAAGACAAAGGGCAAGGGACTTCATTGGAGAACTTCTCAAAAAATATTCTGGTTGGCAAAGGGCAGGTTACTGCTATGACAGCTCTAAAGGAGCTTAGAAAAATCAGCAATCTTTTGTCCGAGATGTGA 2484 0.4183 MPPAVVNPLMPESFSVPSSSSGSVSQGSAPENRRFGDLRGLQWRINLGVFPSSASIDYLRRATADCRRRYASLRRHLLVDPHTSKRGSNSPDLVIDNPLSQNPDSTWSRFFRSAELERMVDQDLSRLYPEHGSYFQTPGCQGMLRRILSLWCLKHPECGYRQGMHELLAPLLYVLQVDVERLSEIRKLYEDHFTDRFDGLICQENDLSYSFDFRKSPDMMEDEIGSHGNAKKVSNLEELDPVIQNIVLLSDTYGAEGELGIVLSEKFIEHDAYCMFDALLSGAHGLVAMADFFSSSPAVGSYTGLSPVIEASRALYCLLSFVDSPLHSHLVDLGVEPQYFALRWLRVLFGREFSLDNLLIIWDEIFASDNSEVEKGPDDYIDSGIRILHSPRGAFISAMAVAMILHLRSSLLATENATTCLQRLLNFPQNTNIKNLLEKAKSLQALALSADISIPPFFDVYNQSKSPITRSLTLPSETLSPRTPLNLLPDSYWEEKWRVVHKAEETKKDGADKQVPTWKKGWTEKMKFSLKRAESDPSPSKVQGGKSESKASVRRSLLEDLNGALGLDEDTEKMHCVETSNQQDNVSVRVDGEDQDGGRKDNCCTVEDRFLSGNTGSEENSSSFTDPISPPNEVNDHENYSEKSSVASNLSFNESNEDSLCGSNVTTLPISSIPENMSQISGFNNDITGNSAIVSKESKVNKIGWFWKFGRNDNEVVTEKGGDASEATKAGNSSSKSNTTASATCSKSSSVSCKGDSLDQNVMGTLRNLGQSMLENIQVIESVFQQDKGQGTSLENFSKNILVGKGQVTAMTALKELRKISNLLSEM 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0898 827 Gene3D - 308 451 - -
Lele22g0898 827 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 37 329 IPR035969 -
Lele22g0898 827 SMART tbc_4 24 399 IPR000195 -
Lele22g0898 827 MobiDBLite consensus disorder prediction 727 750 - -
Lele22g0898 827 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 104 284 - -
Lele22g0898 827 MobiDBLite consensus disorder prediction 578 648 - -
Lele22g0898 827 ProSiteProfiles TBC/rab GAP domain profile. 33 369 IPR000195 -
Lele22g0898 827 MobiDBLite consensus disorder prediction 12 30 - -
Lele22g0898 827 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 33 440 - -
Lele22g0898 827 MobiDBLite consensus disorder prediction 608 648 - -
Lele22g0898 827 MobiDBLite consensus disorder prediction 720 750 - -
Lele22g0898 827 MobiDBLite consensus disorder prediction 529 553 - -
Lele22g0898 827 Pfam Rab-GTPase-TBC domain 117 177 IPR000195 -
Lele22g0898 827 Pfam Rab-GTPase-TBC domain 310 369 IPR000195 -
Lele22g0898 827 FunFam TBC1 domain family member 5 308 452 - -
Lele22g0898 827 MobiDBLite consensus disorder prediction 589 606 - -
Lele22g0898 827 MobiDBLite consensus disorder prediction 1 31 - -
Lele22g0898 827 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 307 444 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0898 Lele-ChrLele22 6067851 6072200 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0979 18 6467798 6479776 Lele22g0898 22 6067851 6072200 CCT
Lele19g1010 19 6429295 6440308 Lele22g0898 22 6067851 6072200 CCT
Lele20g0438 20 12041932 12058851 Lele22g0898 22 6067851 6072200 CCT
Lele17g0532 17 17477859 17481455 Lele22g0898 22 6067851 6072200 CCT
Lele22g0898 22 6067851 6072200 Lele22g0898 22 6067851 6072200 ECH
Lele22g0898 22 6067851 6072200 Lele23g1154 23 17098558 17103117 hybridization
Lele22g0898 22 6067851 6072200 Lele24g0870 24 5949342 5954013 hybridization