Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0439 ATGCGCTCAGGAGGTTGTGCATTACAGCAGACCCTCACATCGGAGGCTGCATCTGTGTTGAAGCATTCTCTGGGCTTGGCTCGCAGGAGGGGCCATGCCCATGTCACTCCACTCCACGTGGCAGCCACCTTGCTCAGCCTTAGAGCCAGCTCCTTCAGAAGGGCTTGTCTCAAATCTCATCCTCATCACCAAACATCTCCACATTCACATCATCCTCTCCACGGCAGAGCCCTTGAGCTCTGTTTCAATGTGGCTCTCAACAGGCTCCCAACCACACCAGCTCCAGATCTGCTTCACACCCAGCAGCCTTCTCTTTCTAATGCTCTCATTGCTGCTCTCAAAAGAGCTCAGGCTCAACAGAGAAGGGGTTGTATAGACCAACAGAATCAGCAGCCACTTTTGACCGTAAAGGTAGAGCTTGAACAGCTTGTTATATCTATTCTTGATGACCCTAGTGTTAGCAGGGTTATGAGAGAGGCTGGGTTCTCTAGTACTGCTGTGAAGAGCAGTATAGAGGACTCTTCAGTTTCACCTCCTTGTTCCGTTTTCCAGTGTTACGGCACTTCTGGAGGTGTCTTTTCTTCTCCTTGCTCTCCTTCTCCTAGTGAAAACCAGAGGGAAACCATCAATCCCAACAGTTTCAGGCACACCCACTTCTACACTGCTCCTGAGTACTATTTCTCTTCTCAAAAGAGAACCCCAGTGTACCCTATCACTGAACCAGCTTCATCTAAGGAAGACATCAAGTTGGTTTTGCATGTGCTCTTGAGGAAGAAGAAGAGGAACGCTGTGATAGTTGGGGATTCTGTATCCATCACTGAAGGCCTTGTGGGAGAGTTGATGGGAAGATTAGACAATGGAGAGGTTCCTGATGAGTTGAAGTCAACCCGTTTCATCAAGTTTCCTCTAGCACCAGTTTCCTTGAGGTTCATGAAGAGAGATGAAGTTGAAATGAACCTCTTGGAGCTGAAAAGAAAGGTGGATTCCACTGCATCAGAAGGAGGTGGTACCATTATTTACATTGGAGATCTGAAATGGACAGAGGAGGCAACTTTCTTTAGTGAAAAAGAGGAGGGAGGAGAAGCATCTGGATATAACCCAGTGGATCATCTAATTGCAGAAATAGGAAAGTTGTTCTCTGACCATGGAAGCTCATCAAATGCTAAGGTATGGCTGATGGCAACTGCAAGTTACCAAACATACATGAGATGTCAAATGAGGCAGCCTCCTCTTGAGACCCGGTGGTCTTTTCAGGCAGTTCTTGTTCCTTCAGGTGGACTTGGCTTGAGCCTCCATGCTTCCAGTGTTCTTGAGTCAAAAATGACCATTTCCCAGAACTCAGCTCAGATGCTGGGAAAAAAACTCTTCAGTAATAGGGAGGAGCAGGACAAGCTCACTTGCTGTGAAGAATGTGCCTCTAATTATGGAAAGGATGCTCAAATGTTCAAGCCAGGCCAGACCAAATTCTTGCCTTCCTGGCTTCAGTCTCGTAGCATTGACGCCCATCAGAAGGAGGAATTAACCCAGTTAAGAAGAAAATGGAATAAACTTTGCCTGTTTCTTCACCAAAGCAAGCATTCCCAGAACCACTGGAACAACAGTGTATACAGCAATCACAGTCCAAATGGGAAGATTTATCCCTATAATTCTTCATATCCCATGAGGTCAAAGCAAGGAAGTATTTTCCCAGATTCAAGTTGCATATCATTTGTAGACTCTGCTGCTAATTCCACCACTCATAGCTCCAATCTTGTACCTCGATTCCAATACCAACAATCATGCACTATTGAGTTCAATTTTAGCAGTGGAACTCAGAAACAACAGCAAGCAACAGCAGAAGAACCGAGTTTGGAATCTCTTAAGGGCATGGAAGGTAAAGAAGTAAAGATTACTCTTGCTCTTGGGAATTCCCAATTCGGTGGTTCAGAGCAAAGGGAGGAAAATATAACTACTGATACAACACAGCGAAGAGCTCATGTTTGTAAACTATTGCAGGAGAATGTGCCATGGCAATCTGAAACAATCCCTTCAATAGCAGAGGTTTTGGTTGTTGATTCCCAATCAAAAAGGCAAAACGCAACTTGGTTGGTTTTGAATGGCAACGACTCTGTAGGGAAAATAAGGTTGGCTCGTGCAATTGCCGAATCGTTCTTTGGTTCAGATGATCTGCTTCTTCAAGTGGACGTGAAGAAGGAGACCTTAGCATCTCCATCATCTGAAGTGCTGAGGAGAGCTTTGGAAGCCCATGAAGAACTCGTCGTTTTAATCGAAAACATTAATTTCGCAGACACCGATTTCAAGAAATTCCTCGTAGACATTTATGAAACAGGAAAATTCAGCCAGGCAATATTCATAGTGACGACCGGTGGCTCAACGATAAACGATGAACAGAATCAGGACTCAGTGATGCAATTAACATTGCAGGTTAGCGAAACCAATCCAAACTTGGAGACACATTGCATCGTGGGTCTAAAGCGAAAAGCAGAATTCGATCTGTTCGCCAAAACAAAATACCCGAGAACCGAAGACAAGGAAGTTGAATCGAACAAAAAGACAGACATCTCGAGAAAGTCAAACTTCAACACCCTTGATCTGAACATAGCCAATGACGAAGACGACGACAACGACGGTGATGATGAGAGTAGCGGGAGCCCCATTTCAAGCGATTTGACCCGAGAAACCATGCCGGATTCCACAAAACCAAATGGGTTTCTGGAGTCAATCAAGAATCAATTCGAGTTCAATCGAAGTCGAGCTCGAGACAGAGAAATGGCAGAGCAATTCTCAACGAGAATAAAAGGGTGCTTTGAAGAACTTCACGGGAAGGAAAAAGTGAGGAATTTCAGTATAGAAGAGAAGGTGATAGATGAAGTAGTTGGTGGGTGTGGTAGTTTTACTAACAGAGTGTTTGAGAAATGGCTAAAAGACATTTTTCAAAGAAGCTTACAAACAGGAAAGGAGAGAGAGGGTATACGTTTTAGACTTTGTTGGGGTGGAAAAGGTAAAGGAGGGGAAATTAGGGTTTTTGATAGTGAAGAAGGTGGTGGGTTCATGAGTTCATGTCTGCCAAAGAGCATAAAAGTTAACTACTTGATGGATTGA 3102 0.4449 MRSGGCALQQTLTSEAASVLKHSLGLARRRGHAHVTPLHVAATLLSLRASSFRRACLKSHPHHQTSPHSHHPLHGRALELCFNVALNRLPTTPAPDLLHTQQPSLSNALIAALKRAQAQQRRGCIDQQNQQPLLTVKVELEQLVISILDDPSVSRVMREAGFSSTAVKSSIEDSSVSPPCSVFQCYGTSGGVFSSPCSPSPSENQRETINPNSFRHTHFYTAPEYYFSSQKRTPVYPITEPASSKEDIKLVLHVLLRKKKRNAVIVGDSVSITEGLVGELMGRLDNGEVPDELKSTRFIKFPLAPVSLRFMKRDEVEMNLLELKRKVDSTASEGGGTIIYIGDLKWTEEATFFSEKEEGGEASGYNPVDHLIAEIGKLFSDHGSSSNAKVWLMATASYQTYMRCQMRQPPLETRWSFQAVLVPSGGLGLSLHASSVLESKMTISQNSAQMLGKKLFSNREEQDKLTCCEECASNYGKDAQMFKPGQTKFLPSWLQSRSIDAHQKEELTQLRRKWNKLCLFLHQSKHSQNHWNNSVYSNHSPNGKIYPYNSSYPMRSKQGSIFPDSSCISFVDSAANSTTHSSNLVPRFQYQQSCTIEFNFSSGTQKQQQATAEEPSLESLKGMEGKEVKITLALGNSQFGGSEQREENITTDTTQRRAHVCKLLQENVPWQSETIPSIAEVLVVDSQSKRQNATWLVLNGNDSVGKIRLARAIAESFFGSDDLLLQVDVKKETLASPSSEVLRRALEAHEELVVLIENINFADTDFKKFLVDIYETGKFSQAIFIVTTGGSTINDEQNQDSVMQLTLQVSETNPNLETHCIVGLKRKAEFDLFAKTKYPRTEDKEVESNKKTDISRKSNFNTLDLNIANDEDDDNDGDDESSGSPISSDLTRETMPDSTKPNGFLESIKNQFEFNRSRARDREMAEQFSTRIKGCFEELHGKEKVRNFSIEEKVIDEVVGGCGSFTNRVFEKWLKDIFQRSLQTGKEREGIRFRLCWGGKGKGGEIRVFDSEEGGGFMSSCLPKSIKVNYLMD 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0439 1033 MobiDBLite consensus disorder prediction 881 906 - -
Lele20g0439 1033 Gene3D - 235 424 IPR027417 -
Lele20g0439 1033 SUPERFAMILY Double Clp-N motif 12 172 IPR036628 -
Lele20g0439 1033 Gene3D - 9 175 IPR036628 -
Lele20g0439 1033 Gene3D - 641 835 IPR027417 -
Lele20g0439 1033 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 985 - -
Lele20g0439 1033 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 650 790 IPR027417 -
Lele20g0439 1033 Coils Coil 313 333 - -
Lele20g0439 1033 ProSiteProfiles Clp repeat (R) domain profile. 8 179 IPR004176 -
Lele20g0439 1033 Pfam Clp amino terminal domain, pathogenicity island component 26 46 IPR004176 -
Lele20g0439 1033 Pfam Clp amino terminal domain, pathogenicity island component 138 173 IPR004176 -
Lele20g0439 1033 MobiDBLite consensus disorder prediction 864 906 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0439 Lele-ChrLele20 12063375 12066858 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0532 17 17477859 17481455 Lele20g0439 20 12063375 12066858 hybridization
Lele18g0978 18 6458804 6462358 Lele20g0439 20 12063375 12066858 hybridization