LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele19g1009	ATGCGCTCAGGAGGTTGTGCATTACAGCAGACCCTCACATCGGAGGCTGCATCTGTGTTGAAGCATTCTCTGGGCTTGGCTCGCAGGAGGGGCCATGCCCAGGTCACTCCACTCCACGTGGCAGCCACCTTGCTCAGCCTTAGAGCTAGCTCCTTCAGAAGGGCTTGTCTCAAATCTCATCCTCATCACCAAACTTCTCCACATTCACATCATGCTCTCCACGGCAGAGCCCTTGAGCTCTGCTTCAATGTGGCTCTCAACAGGCTCCCAACCACACCAACTCCAAATCTGCTTCACACCCAGCAGCCTTCTCTTTCAAATGCTCTCATTGCTGCTCTCAAAAGAGCCCAAGCTCACCAGAGAAGGGGTTGTATAGAACAACAGAATCAGCAGCCACTTTTGACCATTAAGGTAGAGCTTGAACAGCTTGTTATATCTATTCTTGATGACCCTAGTGTTAGCAGGGTCATGAGAGAGGCTGGGTTCTCTAGTACTGCTGTGAAGAGCAGTATAGAGGACTCTTCAGTTTCGCCTCCTTGTTCCGTTTTCCAGTGTTACAGCACTTCTGGAGGGGTATTTTCTTCTCCTTGCTCTCCTTCACCTAGTGAAAACCAGAGGGAAACCATCAATCCCAACAGTTTCAGGCACACCCACTTCTACACTGCTCCTGAGTACTTCAACACAGTTCTTTTCTCTCCTCAAAAGAAAACCCCAGTGTACCCTATCACTGAACCAGCTTCATCTAAGGAAGACATCCAGTTGGTTTTACATGTGCTCTTGAGGAAGAAGAAGAGGAACGCTGTGATAGTTGGGGATTCTGTGTCCATCACTGAGGGCCTTGTGGAAGAGTTGATCGGAAGATTAGACAAAGGAGAGGTTCCTGATGAGTTGAAGTCAACCCGTTTCATCAAGTTTCATCTAGCACCGGTTTCCTTGAGGTTCATGAAGAGAGATGAAGTTGAAATGAATCTCTTGGAGCTGAAAAGAAAGGTGGATTCCACTGCATCAGGAGGAGGTGGTGCCGTTATTTACGTTGGAGATCTGAAATGGACAGAGGTGGCAACTTTCTTTAGTGAAAAAGAGAAGGGAGGAGAAGCATCAGGATATAACCCAGTGGATCATCTAATTGCAGAAATAGGAAAGTTGTTCTCTGACCATGGAAGCTCATCAAATGCTAAGGTATGGCTGATGGCAACTGCAAGTTACCAAACATACATGAGATGTCAAATGAGGCAGCCTCCCCTTGAGACCCAGTGGTCTTTTCAGGCAGTTCTTGTTCCTTCAGGTGGACTTGGCTTGAGCCTCCATGCTTCCAGTGTTCTTGAGTCAAAAATGACCAATTCCCAGAACTCATCTCATATGCTGGAAAAGAAACTCTTCAATAATGGGGAGGATCAGGATAAGCTCACTTGCTGTGAAGAATGTGCCTCTAATTATGAAAAGGATGCTCAAATGTTCAAGCCAGGCCAGACCAAATTATTTCCTTCCTGGCTTCAGTCTCATAGCATTGAAGCCCATCAGAAGGAGGAATTAACCCAGTTGAGAAGAAAATGGAATAGACTATGCCAGTTTCTTCACCAAAACAAGCATTCCCAGAACCACTGGCACAACAGTGTTTACAGCAATCACAGTCCAACTGGGAAGATTTATCGCTATAATTCTTCATATCCCATGTGGTCAAAGCAAGCAAGTATTTTCCCAGATTCAAGTTGTATATCATTTGCAGACTCTGCTGTTAATTCCACTCATAGCTTCAATCCTGCACCGAAATTTCGACGCCAACAATCATGCACCATTGAGTTCAATTTTAGCAATGGAACTCAGAGACAGCCGCAAGCAACAGCAGAAGAACCGAGCTTGGAATCTCTCAAGGGCAAGGAAGGTAAAGAAGTAAAGATTACTCTTGCTCTTGGGAATTCCCAATTCGGTGGTTCCGAGCAAAGGGAGGAAAATATAACTACTGATACAACACAGCGAAGAGCTCATGTTTGTAAACTGTTGCAGGAGAATATGCCATGGCAATCTGACACAATTCCTTCAATAGCAGAGGCTTTAGTTGTTGATTCCCAATCAAAAAGGCAAAACCCAACTTGGTTGGTTTTGAATGGCAATGACTCTAGAGGGAAAATAAGGTTGGCTCGTGCAATTGCCGAATCGTTCTTTGGTTCACATGATCTGCTTCTTCAACTGGACATGAAGAAGGAGACCTCAGAATCTCCATCATCTGAAGCGCTGAGGAGAGCTTTGGGAGCCCATGAAGAACTCGTCGTTTTAATCGAAAACATTAATTTCGCTGACAGAGATTTCAAGAAATTCCTCGGAGACATTTATGAAACAGGAAAGTTCGGCCAGGCAATATTCATAGTGACGACCGGTGGCTCAACGATAAACGAAGAACAGAGTCAGGACTCAGTGATGCAATTAACATTGCAGGTCAGCGAAACCAATCCAAACTTGGAGACACATTGCATTGTGGGCCAAAAGCGAAAAGAAGAATTCGATCTGTTCGCCAAAACAAAAAACCCGAGAACCGAAGACAAGGAAGTTGAATCGAACAGAAAGAAAGACTACTCGAGACAGTCAAGCTTCAACACCCTTGATCTGAACATTAAAGCCAATGAAGAAGACGACGACGAGGACTGCGATGGTGAGAGTAGTCAGAGCCCCATTTCAAGCGATTTGACCCGAGAAACCATGCCGGATTCCACAAACCCAAATGGGTTTCTGGACTCAATCAAGAACCAATTCGAGTTCCATCGAAGTCGAGCTCGCGACAGAGAAATGGCAGAGCAATTCGCGACGAGAATCAAATGGTGCTTTGAAGAACTTTACGGGAAGCAAACAATGAGGAATTTCAGTATAGAAGAGAAGGTGATAGAGGAAGTAGTTGGTGGGTGTGGTAGTTTTACTAACAGAGTGTTTGAGAAATGGCTAAAAGACATTTTTCAAAGAAGCTTAGAAACAGGAAAAGAGAAAGAGGAGGGTATACGTTTTAGACTTTGTTTGGGTGGAAACGGTAAAGCTAAAGGAGGTAAAGGAGGGGAAATTAGGGTTTTGGATAGTGGAGAAGGTGGGTTCATGAGTTCATGTCTGCCAAAGAGCATCAAAGTTAACTACTTGATGGATTGA	3129	0.4484	MRSGGCALQQTLTSEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRASSFRRACLKSHPHHQTSPHSHHALHGRALELCFNVALNRLPTTPTPNLLHTQQPSLSNALIAALKRAQAHQRRGCIEQQNQQPLLTIKVELEQLVISILDDPSVSRVMREAGFSSTAVKSSIEDSSVSPPCSVFQCYSTSGGVFSSPCSPSPSENQRETINPNSFRHTHFYTAPEYFNTVLFSPQKKTPVYPITEPASSKEDIQLVLHVLLRKKKRNAVIVGDSVSITEGLVEELIGRLDKGEVPDELKSTRFIKFHLAPVSLRFMKRDEVEMNLLELKRKVDSTASGGGGAVIYVGDLKWTEVATFFSEKEKGGEASGYNPVDHLIAEIGKLFSDHGSSSNAKVWLMATASYQTYMRCQMRQPPLETQWSFQAVLVPSGGLGLSLHASSVLESKMTNSQNSSHMLEKKLFNNGEDQDKLTCCEECASNYEKDAQMFKPGQTKLFPSWLQSHSIEAHQKEELTQLRRKWNRLCQFLHQNKHSQNHWHNSVYSNHSPTGKIYRYNSSYPMWSKQASIFPDSSCISFADSAVNSTHSFNPAPKFRRQQSCTIEFNFSNGTQRQPQATAEEPSLESLKGKEGKEVKITLALGNSQFGGSEQREENITTDTTQRRAHVCKLLQENMPWQSDTIPSIAEALVVDSQSKRQNPTWLVLNGNDSRGKIRLARAIAESFFGSHDLLLQLDMKKETSESPSSEALRRALGAHEELVVLIENINFADRDFKKFLGDIYETGKFGQAIFIVTTGGSTINEEQSQDSVMQLTLQVSETNPNLETHCIVGQKRKEEFDLFAKTKNPRTEDKEVESNRKKDYSRQSSFNTLDLNIKANEEDDDEDCDGESSQSPISSDLTRETMPDSTNPNGFLDSIKNQFEFHRSRARDREMAEQFATRIKWCFEELYGKQTMRNFSIEEKVIEEVVGGCGSFTNRVFEKWLKDIFQRSLETGKEKEEGIRFRLCLGGNGKAKGGKGGEIRVLDSGEGGFMSSCLPKSIKVNYLMD	1042

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele19g1009	1042	Pfam	Clp amino terminal domain, pathogenicity island component	26	46	IPR004176	-
	Lele19g1009	1042	Pfam	Clp amino terminal domain, pathogenicity island component	138	173	IPR004176	-
	Lele19g1009	1042	Gene3D	-	644	856	IPR027417	-
	Lele19g1009	1042	SUPERFAMILY	Double Clp-N motif	12	172	IPR036628	-
	Lele19g1009	1042	MobiDBLite	consensus disorder prediction	885	910	-	-
	Lele19g1009	1042	Gene3D	-	9	175	IPR036628	-
	Lele19g1009	1042	Gene3D	-	240	428	IPR027417	-
	Lele19g1009	1042	MobiDBLite	consensus disorder prediction	835	910	-	-
	Lele19g1009	1042	MobiDBLite	consensus disorder prediction	835	857	-	-
	Lele19g1009	1042	MobiDBLite	consensus disorder prediction	604	624	-	-
	Lele19g1009	1042	ProSiteProfiles	Clp repeat (R) domain profile.	8	179	IPR004176	-
	Lele19g1009	1042	PANTHER	CHAPERONE PROTEIN CLPD, CHLOROPLASTIC	1	995	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele19g1009	Lele-ChrLele19	6418733	6422336	Wgd

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele17g0532	17	17477859	17481455	Lele19g1009	19	6418733	6422336	hybridization
	Lele18g0978	18	6458804	6462358	Lele19g1009	19	6418733	6422336	hybridization