Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0216 ATGGCTCCCGATATCGCCACCGCCACCCTGGCCAAGGCAACCAGGAGTCACCGTGCCTTCGTGACTTTCCTCGCCGGCAATGGTGACTACGTGAAGGGAGTGGTGGGACTGGCCAAAGGTCTGAGAAAGGTGAAGAGCAAGTACCCTCTGGTGGTTGCTATTCTGCCGGATGTTCCCCAGGAGCATCGCCAGATCCTAATCTCTCAAGGCTGCATCGTCCGCGAGATCGAGCCAGTCCACCCTCCTGAGAACCAAACCCAGTTCGCCATGGCTTATTATGTCATCAATTACTCCAAGCTTCGTATCTGGGAGTTCGTGGAGTACAGCAAGATGATCTATCTCGATGGAGATATCCAAGTGTTCGACAACATAGACCACCTTTTTGATCTGGCAAACGGCTACTTCTACGCCGTGATGGACTGTTTCTGCGAGAAAACCTGGAGCCACACCCCACAGTACAAGATCGGGTATTGCCAGCAGTGCCCTGATAAGGTTCAGTGGCCAGCTGAGTTTGGACCCAAGCCTCCACTCTACTTCAACGCCGGCATGTTTGTTTACGAGCCCAATCTCTCCACCTACCGTGACCTCCTCAAAACCCTCCAAGTCACCGAGCCTACTTCCTTCGCTGAGCAGGACTTCCTGAACATGTACTTCAAGGACAAATATAGGCCCATATCGAACGCGTACAACCTTGTGCTGGCCATGCTGTGGCGCCATCCTGAGAACGTTGAGCTCCAGAAAGTGAAAGTGGTTCACTACTGTGCTGCTGGGTCAAAGCCATGGAGATACACGGGGAAAGAGGAAAACATGGCCAGGGAAGACATCAAGATGCTGGTGAAGAAATGGAGGGATATATACGAGGATGAGACGCTGGACTACGTGAACCCAGTGAACGTGGAGCGGATTCAGGAGGCACTGTCCGAAGCTGGTCGGGTTGCATTCGTTCGCGCCCCGTCTGCCGCTTAG 966 0.5352 MAPDIATATLAKATRSHRAFVTFLAGNGDYVKGVVGLAKGLRKVKSKYPLVVAILPDVPQEHRQILISQGCIVREIEPVHPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLANGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVQWPAEFGPKPPLYFNAGMFVYEPNLSTYRDLLKTLQVTEPTSFAEQDFLNMYFKDKYRPISNAYNLVLAMLWRHPENVELQKVKVVHYCAAGSKPWRYTGKEENMAREDIKMLVKKWRDIYEDETLDYVNPVNVERIQEALSEAGRVAFVRAPSAA 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0216 321 SUPERFAMILY Nucleotide-diphospho-sugar transferases 21 292 IPR029044 -
Lele16g0216 321 PANTHER GLYCOGENIN SUBFAMILY MEMBER 12 289 - -
Lele16g0216 321 Pfam Glycosyl transferase family 8 22 264 IPR002495 GO:0016757
Lele16g0216 321 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 15 293 IPR029044 -
Lele16g0216 321 FunFam Hexosyltransferase 16 294 - -
Lele16g0216 321 CDD GT8_Glycogenin 18 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0216 Lele-ChrLele16 1205154 1206387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0216 1 321 Glycosyltransferase AT1G56600 75.522 0.0 525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g0216 16 1205154 1206387 Lele05g0241 05 1346686 1349052 CCT
Lele16g0216 16 1205154 1206387 Lele06g0056 06 373336 382632 CCT
Lele16g0216 16 1205154 1206387 Lele07g0253 07 1381216 1383585 CCT
Lele16g0216 16 1205154 1206387 Lele08g0056 08 347374 356600 CCT
Lele16g0216 16 1205154 1206387 Lele16g0216 16 1205154 1206387 ECH
Lele13g2205 13 28476378 28477606 Lele16g0216 16 1205154 1206387 hybridization
Lele14g2142 14 26864015 26865245 Lele16g0216 16 1205154 1206387 hybridization