Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2205 ATGGCTCCCGATATCACTACCGCCGTCGCCAACGCCACCGCCACTCAGGCAAAGGCCACCGGGAGGGACCGTGCCTTCGTGACTTTCCTCGCCGGCAATGGTGACTACGTGAAGGGAGTGGTGGGACTGGCCAAAGGTCTGAGAAAAGTGAAGAGCAAGTACCCTCTGGTGGTTGCTATACTGCCGGATGTTCCCCATGAGCATCGTCAGATCCTAATCTCTCAAGGCTGCATCGTCCGCGAGATCGAACCAGTCCACCCTCCTGAGAACCAAACCCAGTTCGCCATGGCTTATTATGTCATCAATTACTCCAAGCTCCGTATCTGGGAGTTCGTGGAGTACAGCAAGATGATCTACCTCGATGGAGATATCCAAGTATTTGACAACATAGACCACCTTTTTGATCTGGCAAGCGGCTACTTCTACGCCGTGATGGACTGTTTCTGTGAGAAAACTTGGAGCCACACCCCACAGTACAAGATCTCGTACTGCCAGCAGTGCCCTGATAAGGTTCGGTGGCCAGCTGAGTTTGGACCCAAGCCTCCCCTCTACTTCAACGCCGGCATGTTTGTTTACGAGCCCAATCTCTCCACCTACCGGGACCTCCTCAAAACCCTCCAAGTCACCGAGCCTACTTCCTTCGCTGAGCAGGACTTCCTGAACATGTACTTCAAGGACAAGTATAGGCCCATACCCAACGTTTACAACCTTGTGCTGGCCATGCTGTGGCGTCATCCTGAGAACGTTGAGCTCCAGAAAGTGAAAGTGGTTCACTACTGTGCTGCTGGGTCAAAGCCATGGAGATACACGGGGAAAGAGGAAAACATGGACAGGGAAGACATCAAGATGCTGGTGAAGAAATGGTGGGATATATACGAGGACGAGACGTTGGACTATGTGAACCCAGTGAATGTGGAGCGAATTCATGAGGCACTATCCGAAGCTGGTCGGGTTGCATTCCTTCCCGCCCCGTCTGCGGCTTAG 984 0.5295 MAPDITTAVANATATQAKATGRDRAFVTFLAGNGDYVKGVVGLAKGLRKVKSKYPLVVAILPDVPHEHRQILISQGCIVREIEPVHPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLASGYFYAVMDCFCEKTWSHTPQYKISYCQQCPDKVRWPAEFGPKPPLYFNAGMFVYEPNLSTYRDLLKTLQVTEPTSFAEQDFLNMYFKDKYRPIPNVYNLVLAMLWRHPENVELQKVKVVHYCAAGSKPWRYTGKEENMDREDIKMLVKKWWDIYEDETLDYVNPVNVERIHEALSEAGRVAFLPAPSAA 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2205 327 CDD GT8_Glycogenin 24 294 - -
Lele13g2205 327 FunFam Hexosyltransferase 22 300 - -
Lele13g2205 327 SUPERFAMILY Nucleotide-diphospho-sugar transferases 27 298 IPR029044 -
Lele13g2205 327 PANTHER GLYCOGENIN SUBFAMILY MEMBER 14 294 - -
Lele13g2205 327 Pfam Glycosyl transferase family 8 28 270 IPR002495 GO:0016757
Lele13g2205 327 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 21 299 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2205 Lele-ChrLele13 28476378 28477606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2205 1 327 Glycosyltransferase AT1G56600 75.074 0.0 533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2205 13 28476378 28477606 Lele05g0241 05 1346686 1349052 CCT
Lele13g2205 13 28476378 28477606 Lele06g0056 06 373336 382632 CCT
Lele13g2205 13 28476378 28477606 Lele07g0253 07 1381216 1383585 CCT
Lele13g2205 13 28476378 28477606 Lele08g0056 08 347374 356600 CCT
Lele13g2205 13 28476378 28477606 Lele13g2205 13 28476378 28477606 ECH
Lele13g2205 13 28476378 28477606 Lele15g0209 15 1201651 1202879 hybridization
Lele13g2205 13 28476378 28477606 Lele16g0216 16 1205154 1206387 hybridization