LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele06g0056	ATGGCTTCCAAGGCAGGTACGGAGATAGCAAGTCCTCGCTTTCCGATGTTATCCCTAGATAGTTTCAAATGCTCTCTTAATTTTCTTGTGCACTTTTTCCCAGGAGGAAGTTCTGTTGATTTATGGTCAGATATTGTAGGTGCTGATGCACCGCAGCAGCAGCATCAACAAATTGAAGTGGTATACATAAGAAGAAAACCCCAGAACAACCAAAATGACTTGAACTTTGCTTCCAGAAAGCATTCGGATATTAGTCGCCTGCCTGCGAATCGCGTGAGTTTGGTCGACCCAAACAAGCGAATTTTAAGCTATGCTTATCTGAGATCTTCTGTAAAATCCGTGAAAGTCAATCCACATCTTCATACCATCATAACTGAAGGCAGCAGTACTCTACTTGATAATGGTCCATTTGAGGATGGCATCAATTTGCCAACTGATAAAATATCCACTCAAGATGATGAAGATTCTGCAAATTTAGAAGCTGCTGTTAAGAAACTCTCACTGACATCATCATCAGCTTTGGCAGATGAACATTTTAGTCCATTTGCTGCTTTATTAGAAATATGTGGACAGTCTGTGCCTTCGAAGTTTCAAGATGTGCTTTCTAAGTATTGAGATCAGGAGAATTGCTGGAGGAGGTGGTTCTTTCGAAAACTCTTAAACTATTTGAGGATAAATGATGGAGACGCTCATAATTCTTGTGGAATATTTATTGAAACAATAGAGGCTGGAAAGGGAAAAGTTGAGTGTTATATGGTGTTTGTATTACAACACGGTGGCAAGGATCTTGAAAGCTTTGCACTTTTGAATTTTGACGAGGCAAGGAGTTTACTAATTCAGGTTACTGCTGGGCTTGCTGTGGCTGAATCTGTATATGAATTTGAACATCGAGATCTTCACTGGGGAAACATACTTTTAAGTCAAAGCGACTGTGAGACATTGCAGTTCACTCTTGATGGCAGGCATATGCTTGTTAAAACATATGGACTGATAATATCTATTATTGACTTTACTCTGTCACGAATAAACACAGGTGATGATGTACTCTTCTTGGATCTTTCCTCAGATCCCGATCTATTTAAAGGTTCTAAAGGGGACAAACAGTCAGAAACATATAGGAAGATGAAGGAGGTTACAGAAGATTGGTGGGAAGGAAGTTTTCCTAGGACAAATGTGTTGTGGTTGATCTACTTGGTCGATATGCTGCTGACGAAGAAATCATTTGAGCGTACTTCAAAGAATGAGAGAGATCTGCGTTCCTGGAAGAAACGTCTGGACAAGTACAATTCAGCCAATTTCTTCTTGTCTTCTTTGATTTCTGAAAATGCACGTGTTACTGGGTTCTATAGGAATCCCATTTATCTATTTCACAATGCTACTTCTTGAACTCTTGTGGGATTTTCATATCGTGAAAGAGGGGACGCTGGGACCATATCTCATATTCGAATTTTTTTCACGGATCCTAGAACTTTGAGCACTCTCACCAACTCCCGCGAGTCGCTTGATTTCTATCTCAACGATGACGTCCTTAAATCTTTGATTAGCTCAAATCCATGGGCAATTTCATGGCTGAAAACCAATCTTGTAGATCTTCTTCCAAAAACTGAAATCAATAGCATTATAGCTAGCTGTGGGAATTTAGCCCAAAATGAGGTACCATTACTGGTTTCTGCTCTGAAATCTATTCATTCAGTTCTCAGTAATCTTCATCTAGGCAGGGAAGTGAAGGTCTCAGTAGCATGTCCTCTGTCATTCTTAGAGAAGTGGAAAAATTCAAATGAGAATGAAGTCCATAGGATTTTGTCATTTATAAAGGAAACAAATTCCTTTGTCATGATAGACAACAGCATTGATGGGGAAATAAGCATAGGGGACCGTTTTGTACATTCTGCTATAAAACGAGCTACTCATGCTGCTCCTATCCTTCCTCACAAAGATGTTCCCTTGGTACTAACAATAAAAATCCCAGCAATTCCCAGTTCGATGAAACTAGCTCAATTCAGCCAAACACTACCAAAACATCTTGAAGCAACCAGCTCTAAGGTCAGTGGTAGAGTAATGGCATTTTATGCAGAAGTACATGCAATAGAAGCTTTTGAGAATGAACAGCTCAAAAGGGAAGAAGAGGAAGAGATTTTTCCCTTGTCCCGCAGACAAATCCTAAGCAAATTCCACATCAGAAGAACTCTGGATGAAATTTACCCCACAAATCCAACTTCAGCTGCACCAGTAGTTACAACCCCAGATGCACCAACCATTATCACAGTTCCCTCCACCATTCCTTCTCCTCCCACCAAGCCTGCTGCAATGCCTGTGACAGTTCCTACCACAACCTCTGTGCCATTACCTCCCACAAATCAGGCCAATACTGGGGCAACCCCGATAACTGTTCCGGGCGCACAACCAGCAACATATTATCCACCCCCAACAGGAGGTGTTCCTGTGGTGAACTCCATTCCACCTCCTGCAAACAGCAATGCTCCGACCACAGCAGGGCAGAGTTGGTGTGTGGCCAAAACTGGAGCTGCAGAGACTGCTCTTCAATCAGCATTGGACTATGCTTGTGGAATGGGTGGTGTGGACTGTTCACAAATCCAGCAGAGTGGGAATTGTTACAATCCAAATGCTCTTGAAAACCATGCTTCTTATGCCTTCAACAGCTACTACCAGAAAAATCCAGCACCAACAAGCTGTGACTTTGGAGGGGCTGCCACCCTAGTTAACGTGAACCCAAGCTCGGATTCTTGCATTTTTCCATCATCCTCTTCCTCTCTTTCATCTTCAACCCCAACAACAACGACATCGTCAACTCCCACTCCCACTCCAACAACAGCATCTTCATCATCTGGGACAGACATATCAGGGTGA	2868	0.4212	MASKAGTEIASPRFPMLSLDSFKCSLNFLVHFFPGGSSVDLWSDIVGADAPQQQHQQIEVVYIRRKPQNNQNDLNFASRKHSDISRLPANRVSLVDPNKRILSYAYLRSSVKSVKVNPHLHTIITEGSSTLLDNGPFEDGINLPTDKISTQDDEDSANLEAAVKKLSLTSSSALADEHFSPFAALLEICGQSVPSKFQDVLSKYXDQENCWRRWFFRKLLNYLRINDGDAHNSCGIFIETIEAGKGKVECYMVFVLQHGGKDLESFALLNFDEARSLLIQVTAGLAVAESVYEFEHRDLHWGNILLSQSDCETLQFTLDGRHMLVKTYGLIISIIDFTLSRINTGDDVLFLDLSSDPDLFKGSKGDKQSETYRKMKEVTEDWWEGSFPRTNVLWLIYLVDMLLTKKSFERTSKNERDLRSWKKRLDKYNSANFFLSSLISENARVTGFYRNPIYLFHNATSXTLVGFSYRERGDAGTISHIRIFFTDPRTLSTLTNSRESLDFYLNDDVLKSLISSNPWAISWLKTNLVDLLPKTEINSIIASCGNLAQNEVPLLVSALKSIHSVLSNLHLGREVKVSVACPLSFLEKWKNSNENEVHRILSFIKETNSFVMIDNSIDGEISIGDRFVHSAIKRATHAAPILPHKDVPLVLTIKIPAIPSSMKLAQFSQTLPKHLEATSSKVSGRVMAFYAEVHAIEAFENEQLKREEEEEIFPLSRRQILSKFHIRRTLDEIYPTNPTSAAPVVTTPDAPTIITVPSTIPSPPTKPAAMPVTVPTTTSVPLPPTNQANTGATPITVPGAQPATYYPPPTGGVPVVNSIPPPANSNAPTTAGQSWCVAKTGAAETALQSALDYACGMGGVDCSQIQQSGNCYNPNALENHASYAFNSYYQKNPAPTSCDFGGAATLVNVNPSSDSCIFPSSSSSLSSSTPTTTTSSTPTPTPTTASSSSGTDISG	955

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele06g0056	955	Gene3D	Transferase(Phosphotransferase) domain 1	259	440	-	-
	Lele06g0056	955	SMART	X8_cls	834	918	IPR012946	-
	Lele06g0056	955	Gene3D	-	829	935	-	-
	Lele06g0056	955	PANTHER	INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE	249	436	-	-
	Lele06g0056	955	FunFam	Glucan endo-1,3-beta-glucosidase 4	829	922	-	-
	Lele06g0056	955	FunFam	serine/threonine-protein kinase haspin	259	440	-	-
	Lele06g0056	955	MobiDBLite	consensus disorder prediction	916	955	-	-
	Lele06g0056	955	Pfam	X8 domain	835	905	IPR012946	-
	Lele06g0056	955	SMART	DUF3635_2	357	440	IPR024604	-
	Lele06g0056	955	SUPERFAMILY	Protein kinase-like (PK-like)	212	345	IPR011009	-
	Lele06g0056	955	MobiDBLite	consensus disorder prediction	757	809	-	-
	Lele06g0056	955	MobiDBLite	consensus disorder prediction	771	797	-	-
	Lele06g0056	955	Pfam	Haspin like kinase domain	249	426	-	-
	Lele06g0056	955	Gene3D	Glycosidases	474	616	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele06g0056	Lele-ChrLele06	373336	382632	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele06g0056	808	921	Glycoside Hydrolase	AT2G05790	50.435	4.48e-27	114

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele13g2205	13	28476378	28477606	Lele06g0056	06	373336	382632	CCT
	Lele14g2142	14	26864015	26865245	Lele06g0056	06	373336	382632	CCT
	Lele15g0209	15	1201651	1202879	Lele06g0056	06	373336	382632	CCT
	Lele16g0216	16	1205154	1206387	Lele06g0056	06	373336	382632	CCT
	Lele06g0056	06	373336	382632	Lele06g0056	06	373336	382632	ECH
	Lele06g0056	06	373336	382632	Lele07g0253	07	1381216	1383585	hybridization
	Lele06g0056	06	373336	382632	Lele08g0056	08	347374	356600	hybridization