Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0593 ATGGAGAGTTTACTAAAGGGTGTAAGAGGTGGTGAGTGTGTGCTTGACCTCAGTCCAAGATCCACCGTTGGTGGTGGTGTTGAGGATATCTACGGTGAAGATTGTGCCACCGAGGACCAGCTTATCACCCCTTGGACTTTCTCTGTTGCAAGTGGCTGCTCTTTGCTAAGGGATCCACAGTACAACAAAGGACTTGCTTTCACTGAGAAAGAAAGGGATGCACACTATTTGCGTGGCCTCCTTCCTCCCACAGTTAGCTCCCAAGAACTTCAGGAGAAGAAACTGATGAACAGCATCAGACAATATGAGGTTCCCTTGCAAAAGTATGTGGCTATGATGGACCTTCAGGCATGCATCTTCACTCATTTTAGTTACATTAAACAGCATGAGATGTTTGTTCTTGTTCTTGATGAGAGGAATGAGAGGTTGTTTTACAAACTTCTCATTGATAATGTTGAAGAGTTGCTCCCAGTTGTATATACTCCTACTGTTGGTGAGGCTTGCCAGAAATATGGGAGCATCTTCCGCCGTCCTCAGGGTCTTTACATTAGCTTGAAAGAGAAGGGGAAGGTCCTTGAGGTTTTGAAAAACTGGCCTGAGAGGAGTATTCAAGTTATTGTTGTAACAGATGGTGAGAGGATTTTGGGGCTTGGGGATCTTGGAACTCAGGGGATGGGAATTCCGGTTGGCAAATTGGCTTTGTACACAGCACTAGGAGGAGTTCGTCCTTCGTCTTGTTTACCTGTTACCATTGATGTGGGAACAAATAATGAGAAATTACTGAATGATGAGTTTTACATCGGGCTTAAACAAAAGAGGGCAACCGGCAAGGAATATTATGATCTTCTCCATGAGTTCATGTCAGCGGTGAAACAGAACTATGGAGAAAAAGTTCTTGTACAGTTTGAAGATTTTGCAAATCACAACGCTTTTGAGCTGCTCGCAAAATATGGTACAACCCATCTTGTCTTTAATGATGATATACAGGGGACTGCATCTGTTGTTCTAGCTGGAGTTGTAGCAGCCTTGAAGCTCATTGGTGGTACCTTGCCGGATCACAAATTCCTCTTCCTTGGTGCTGGAGAAGCAGGAACTGGTATAGCAGAGCTAATAGCTCTGGAGATATCAAAGCAGACTAAAGCGCCTGTAGAAGAGAGTCGCAAGAAGATATACCTTGTAGACTCAAAGGGTTTAATTGTTAGTTCAAGGAAGAATTCGCTTCAACACTTCAAGAAACCCTGGGCTCATGATCATGAGCCTGTTGGCACTCTCTTAGAAGCTGTTAAGATAATCAAGCCTACAGTTTTGGTTGGATCGTCCGGAGTGGGAAAAACATTCACGAAGGAAGTGATTGAGGCTATGGCTTCAAACAATAAAATACCTCTCATCCTGGCTCTCTCCAATCCAACCTCGCAGTCTGAGTGTACCGCTGAGGAGGCTTACACATGGAGTGAGGGTCGTGCAATTTTCGCTAGTGGGAGTCCATTTGATCCTGTTGAATACAACGGCAAAGTCTATTACTCTGGACAGTCCAACAATGCTTACATTTTCCCGGGCTTCGGTTTGGGTTTAGTAATCTCAGGAGCAATCCGAGTACACGATGATATGCTTCTAGCAGCCTCCGAATCGTTGGCTAAACAAGTGACAGATGAACATTATGCAAAAGGATTGACTTACCCATCATTCACTGACATCAGAAAAATTTCAGCTAATATAGCTGCAAGTGTTGCTGCCAAGGCATATGAACTAGGCTTGGCGACACGTCTTCCTCGTCCCGAGAATCTTGTGAAGTATGCTGAGAGTTGCATGTATTCTCCATTATACCGCAACTATAGGTGA 1839 0.4432 MESLLKGVRGGECVLDLSPRSTVGGGVEDIYGEDCATEDQLITPWTFSVASGCSLLRDPQYNKGLAFTEKERDAHYLRGLLPPTVSSQELQEKKLMNSIRQYEVPLQKYVAMMDLQACIFTHFSYIKQHEMFVLVLDERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKVLEVLKNWPERSIQVIVVTDGERILGLGDLGTQGMGIPVGKLALYTALGGVRPSSCLPVTIDVGTNNEKLLNDEFYIGLKQKRATGKEYYDLLHEFMSAVKQNYGEKVLVQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLPDHKFLFLGAGEAGTGIAELIALEISKQTKAPVEESRKKIYLVDSKGLIVSSRKNSLQHFKKPWAHDHEPVGTLLEAVKIIKPTVLVGSSGVGKTFTKEVIEAMASNNKIPLILALSNPTSQSECTAEEAYTWSEGRAIFASGSPFDPVEYNGKVYYSGQSNNAYIFPGFGLGLVISGAIRVHDDMLLAASESLAKQVTDEHYAKGLTYPSFTDIRKISANIAASVAAKAYELGLATRLPRPENLVKYAESCMYSPLYRNYR 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0593 612 SMART malic_2 137 318 IPR012301 GO:0004471
Lal23g0593 612 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 328 611 IPR036291 -
Lal23g0593 612 Pfam Malic enzyme, NAD binding domain 328 580 IPR012302 GO:0051287
Lal23g0593 612 PIRSF ME 28 135 IPR001891 GO:0004470|GO:0004471
Lal23g0593 612 PIRSF ME 127 612 IPR001891 GO:0004470|GO:0004471
Lal23g0593 612 Pfam Malic enzyme, N-terminal domain 138 317 IPR012301 GO:0004471
Lal23g0593 612 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 30 327 IPR046346 -
Lal23g0593 612 Gene3D - 50 325 IPR037062 GO:0004471
Lal23g0593 612 PANTHER MALIC ENZYME-RELATED 20 612 - -
Lal23g0593 612 SMART Malic_M_2 328 581 IPR012302 GO:0051287
Lal23g0593 612 PANTHER MALIC ENZYME 20 612 - -
Lal23g0593 612 PRINTS Malic enzyme signature 143 167 IPR001891 GO:0004470|GO:0004471
Lal23g0593 612 PRINTS Malic enzyme signature 203 232 IPR001891 GO:0004470|GO:0004471
Lal23g0593 612 PRINTS Malic enzyme signature 239 261 IPR001891 GO:0004470|GO:0004471
Lal23g0593 612 PRINTS Malic enzyme signature 299 317 IPR001891 GO:0004470|GO:0004471
Lal23g0593 612 PRINTS Malic enzyme signature 324 340 IPR001891 GO:0004470|GO:0004471
Lal23g0593 612 PRINTS Malic enzyme signature 355 371 IPR001891 GO:0004470|GO:0004471
Lal23g0593 612 PRINTS Malic enzyme signature 458 474 IPR001891 GO:0004470|GO:0004471
Lal23g0593 612 ProSitePatterns Malic enzymes signature. 324 340 IPR015884 GO:0004471
Lal23g0593 612 CDD NAD_bind_1_malic_enz 328 606 - -
Lal23g0593 612 Gene3D - 326 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0593 Lal-Chr23 8702825 8708277 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0593 K00029 - gmx:100782096 1046.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0593 23 8702825 8708277 Lal18g0165 18 1332273 1336833 ECH
Lal23g0593 23 8702825 8708277 Lal8g0263 8 1765375 1771573 ECH
Lal23g0593 23 8702825 8708277 Lal10g1117 10 17984839 17991314 ECH
Lal23g0593 23 8702825 8708277 Lal4g0291 4 1899356 1904394 ECH
Lal23g0593 23 8702825 8708277 Lal10g0754 10 15221590 15223887 ECH
Lal23g0593 23 8702825 8708277 Lal23g0593 23 8702825 8708277 ECH
Lal16g1076 16 7205914 7211742 Lal23g0593 23 8702825 8708277 LSH