Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1117 ATGATCTCCTCCAACAGTTGCACCTTCCTGAGAAGTTCAGGGTTAGGTGGGTCATGCAACTTCTCTGTTGCAAATAGAAGAGTTTCAGGTCCTTCCAGGGTTATGTGTATGGCACCAATCAGCAGGGTTGGTGACAAAAACGGCAGTGTTGTGTTGGAGATTGAGACACAGACGACACCGTTGAAAGAAATTAAAAGTGATTCTGCGGTGGCTGACGTGGACAATAATGAAATCTCCGCCGGCGCCCCTCAGGATGTGTACGGCGAGGATAAGGCCACAGAGGATCAGTCTTTCACTCCTTGGAGTGTCTCTGTTGCTAGTGGTTATTCATTGTTGAGAGATCCTCACTTCAACAAAGGGCTGGCCTTCTCTGAAAAAGAGAGGGACTCCCATTACTTGCGTGGTCTTCTTCCACCAACAGTTATTCCTCAAGAAACCCAGGTGAAGAAAATGATCCAGCACATACGCCAGTATCAGGTTCCACTGCAGAAATACATGGCAATGATGGATCTTCAGGAGAGAAATGAAAGGTTGTTTTACAAGCTTCTTATTGAACATGTTGAAGAGTTACTCCCCGTTGTCTATACTCCCACTGTTGGTGAAGCTTGCCAGAAATACGGGACCATCTTTATGCGTCCTCAGGGTCTTTATATAAGTTTGAAAGAGAAGGGGAAGATTCTTGAAGTACTGAGGAATTGGCCTCAGAAGAACATCCAAGTCATTGTTGTAACTGACGGAGAACGAATCCTTGGTCTTGGGGATCTTGGTTGTCAGGGAATGGGAATACCAGTGGGAAAACTTTCTTTGTATACTGCACTCGGAGGAGTTCGTCCTTCAGCTTGCTTGCCTATTACCATTGATGTGGGTACAAACAATGAGAAGCTGTTGAATGATGAATTATATATAGGGCTCAAGCGAAGACGAGCAACTGGACAGGAATATGCTGAACTCGTGCATGAATTTATGTCTGCTGTCAAGCAAACTTATGGGGAAAAAGTCCTTATTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTGCTTGAAAAATATAGATCAACACATCTTGTTTTCAATGATGATATTCAGGGAACAGCATCAGTGGTCCTTGCTGGCCTAGTTGCGTCTCTGAAATTGGTTGGGGGAAAGTTAGCTGACCACAGATTCTTATTCCTTGGTGCTGGAGAGGCTGGCACTGGAATAGCAGAACTCATAGCACTTGAAATATCAAAGCAGACAAATGTACCGCTGGAGGAAGCACGCAAGAACATTTGGTTGGTGGACTCAAAGGGGTTGATTGTCAGTTCCCGTAAAGAATCACTTCAACATTTTAAGAAGCCCTGGGCTCACGAACATGAACCTGTTAAAAAACTTGTTGATGCTGTTAATCAAATTAAGCCTACGGTGTTAATTGGAACATCCGGGCAAGGACAAACTTTTACTAAGGAGGTGATTGAGGCTATGTCCTCCTTCAATGAGAAACCTATTATTCTTTCTCTTTCCAACCCAACTTCACAATCAGAATGTACTGCTGAACAAGCTTATACATGGAGCCAGGGGCGTGCCATTTTTGCTAGTGGGAGCCCATTTCCCCCAGTGGAATATGGGGGGAAAGTGTTTGTGCCAGGCCAGTCCAATAATGCATACATATTCCCAGGATTCGGTCTAGGTTTAATAATGTCGGGGACTATCCGAGTACATGACGACCTGCTTCTGGCTGCATCTGAGGCTTTGGCTGCAGAAGTGAGTCAGGAAAACTATGATAAGGGTCTCATATTCCCACCATTCACTAACATCAGAAAGATTTCAGCACATATAGCTGCCAAAGTTGCTGCTAAGGCTTATGAGCTCGGCTTGGCCACACGCCTTCCTCAACCTAAGAATTTGGTGGAGTTTGCTGAGAGCTGTATGTATACCCCATCCTACAGAAGCTACCGTTGA 1944 0.4475 MISSNSCTFLRSSGLGGSCNFSVANRRVSGPSRVMCMAPISRVGDKNGSVVLEIETQTTPLKEIKSDSAVADVDNNEISAGAPQDVYGEDKATEDQSFTPWSVSVASGYSLLRDPHFNKGLAFSEKERDSHYLRGLLPPTVIPQETQVKKMIQHIRQYQVPLQKYMAMMDLQERNERLFYKLLIEHVEELLPVVYTPTVGEACQKYGTIFMRPQGLYISLKEKGKILEVLRNWPQKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLLNDELYIGLKRRRATGQEYAELVHEFMSAVKQTYGEKVLIQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVASLKLVGGKLADHRFLFLGAGEAGTGIAELIALEISKQTNVPLEEARKNIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPVKKLVDAVNQIKPTVLIGTSGQGQTFTKEVIEAMSSFNEKPIILSLSNPTSQSECTAEQAYTWSQGRAIFASGSPFPPVEYGGKVFVPGQSNNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALAAEVSQENYDKGLIFPPFTNIRKISAHIAAKVAAKAYELGLATRLPQPKNLVEFAESCMYTPSYRSYR 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1117 647 Pfam Malic enzyme, N-terminal domain 172 353 IPR012301 GO:0004471
Lal10g1117 647 PRINTS Malic enzyme signature 178 202 IPR001891 GO:0004470|GO:0004471
Lal10g1117 647 PRINTS Malic enzyme signature 238 267 IPR001891 GO:0004470|GO:0004471
Lal10g1117 647 PRINTS Malic enzyme signature 274 296 IPR001891 GO:0004470|GO:0004471
Lal10g1117 647 PRINTS Malic enzyme signature 334 352 IPR001891 GO:0004470|GO:0004471
Lal10g1117 647 PRINTS Malic enzyme signature 359 375 IPR001891 GO:0004470|GO:0004471
Lal10g1117 647 PRINTS Malic enzyme signature 390 406 IPR001891 GO:0004470|GO:0004471
Lal10g1117 647 PRINTS Malic enzyme signature 493 509 IPR001891 GO:0004470|GO:0004471
Lal10g1117 647 PANTHER MALIC ENZYME 16 647 - -
Lal10g1117 647 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 89 362 IPR046346 -
Lal10g1117 647 ProSitePatterns Malic enzymes signature. 359 375 IPR015884 GO:0004471
Lal10g1117 647 Gene3D - 106 360 IPR037062 GO:0004471
Lal10g1117 647 CDD NAD_bind_1_malic_enz 363 641 - -
Lal10g1117 647 SMART Malic_M_2 363 616 IPR012302 GO:0051287
Lal10g1117 647 PIRSF ME 66 647 IPR001891 GO:0004470|GO:0004471
Lal10g1117 647 Pfam Malic enzyme, NAD binding domain 363 615 IPR012302 GO:0051287
Lal10g1117 647 PANTHER MALIC ENZYME-RELATED 16 647 - -
Lal10g1117 647 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 363 646 IPR036291 -
Lal10g1117 647 SMART malic_2 172 353 IPR012301 GO:0004471
Lal10g1117 647 Gene3D - 361 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1117 Lal-Chr10 17984839 17991314 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1117 K00029 - gmx:100791514 1111.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1076 16 7205914 7211742 Lal10g1117 10 17984839 17991314 ECH
Lal23g0593 23 8702825 8708277 Lal10g1117 10 17984839 17991314 ECH
Lal10g1117 10 17984839 17991314 Lal10g1117 10 17984839 17991314 ECH
Lal10g1117 10 17984839 17991314 Lal4g0291 4 1899356 1904394 ECH
Lal10g1117 10 17984839 17991314 Lal10g0754 10 15221590 15223887 ECH
Lal10g1117 10 17984839 17991314 Lal8g0263 8 1765375 1771573 LSH
Lal10g1117 10 17984839 17991314 Lal18g0165 18 1332273 1336833 PCT
Lal18g0165 18 1332273 1336833 Lal10g1117 10 17984839 17991314 PCT