Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0165 ATGGAGAATGAGATGAAAAATGATGATTCTCCGGTAGTGGCTGATATACACGGTTGCGCCACCATCGCCGGCGGTGTTCAGGATGTGTATGGAGAAGATAGGGCCACAGAGGATCAGCTTCTTACTCCATGGAGTACCTCTGTTGCTAGTGGGTATACTTTGTTGAGAGATCCACACTACAACAAAGGGTTGGCTTTCACTGAACAAGAGAGAGATGCTCATTACTTGCGTGGTCTTCTTCCTCCTACAGTTATTTCTCAAGATACTCAGGTGAAGAAACAGATCCAACTCATACGCCAGTATCAAGTTCCATTGCAGAAATACACAGCAATGATGGCTCTTCAGTTGAGAAATGAAAGGCTGTTTTACAAGGTTCTTATAGATCATGTTGAGGAGTTACTTCCAGTTGTCTATACTCCAACCGTTGGTGAAGCATGCCAGAAATATGGAAGCATCTTCATGCGTCCTCATGGTCTTTATATAAGTTTGAAGGAAAAAGGAAAGATTCTTGAGGTACTAAGGAATTGGCCTGAAAGGAAGATTCAAGTCATTGTTGTAACAGACGGAGAACGAATCTTGGGTCTTGGAGATCTTGGCTGTCAGGGAATGGGAATACCAGTGGGAAAACTTGCTTTATATACAGCGCTTGGTGGAGTTCGTCCTTCTTCATGCTTGCCTATTACCATTGATGTGGGTACAAACAATGAGAAGTTGTTGAATGATGAATTATATATAGGGCTCAAACATAGAAGAGCAACTGGGCAGGAATATGCTGAACTTCTGAATGAATTTATGATTGCTGTGAAGAAAAACTATGGTGAAAAAATCCTTGTCCAGTTTGAAGACTTTGCAAACCACAATGCATTTGATCTACTTGAAAAATATAGGTCGACGCATCTCGTTTTTAACGATGATATTCAGGGAACAGCATCAGTGGTCCTTGCAGGACTGGTTGCAGCTCTGAAATTAGTTGGGGGAAGCTTAGCTGACCACAAGTTTTTATTTCTCGGTGCTGGAGAGGCTGGTACTGGAATAGCAGAACTCATAGCACTTGAAATATCGAAACGGACAAGTCTCCCGGTCGATGAAGTGCGCAAGAACATTTGGTTGGTGGACTCGAAGGGATTGATTGTTAGTTCCCGTAAAGAGTCGCTCCAACATTTTAAGAAGCCTTGGGCTCATGAACATGAACCTGTTAATCAACTTTTAGATTGTGTTAATCAAATTAAGCCAACGGTGTTGATCGGAACATCGGGGCAAGGGAAAACTTTTACTAAAGAAGTGGTTGAGTCTATGGCCTCCAATAATGAGAAACCTATTATTCTTGCCCTTTCCAACCCAACATCACAGTCAGAATGTACTGCTGAAGAAGCTTACACATGGAGCCAGGGACGTGCTATTTTCGCTAGTGGTAGCCCATTTTCCCAAGTTGAATATGAAGGAAAAGTTTTTATGCCAGGCCAGGCCAATAATGCATACATTTTTCCTGGATTCGGTCTTGGTTTAATAATGTCGGGGACCATTCGAGTTCATGATGATCTGCTTTTGGCAGCTTCTGAAGCATTGGCTTCACAAGTGACTCAGGAGAACTATGACAATGGACTCATATTCCCACCATTCACTAACATCAGAAACATTTCAGCACACATAGCTGCCAGTGTTGCTGCTAAGGCCTATGACCTTGGTTTGGCCACTCGCCTTCCTCAACCTAAAGATTTGGTGAAGTTTGCTGAGAGCTGTATGTATACTCCAACCTATAGAAACTATCGATGA 1773 0.4264 MENEMKNDDSPVVADIHGCATIAGGVQDVYGEDRATEDQLLTPWSTSVASGYTLLRDPHYNKGLAFTEQERDAHYLRGLLPPTVISQDTQVKKQIQLIRQYQVPLQKYTAMMALQLRNERLFYKVLIDHVEELLPVVYTPTVGEACQKYGSIFMRPHGLYISLKEKGKILEVLRNWPERKIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSSCLPITIDVGTNNEKLLNDELYIGLKHRRATGQEYAELLNEFMIAVKKNYGEKILVQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGSLADHKFLFLGAGEAGTGIAELIALEISKRTSLPVDEVRKNIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPVNQLLDCVNQIKPTVLIGTSGQGKTFTKEVVESMASNNEKPIILALSNPTSQSECTAEEAYTWSQGRAIFASGSPFSQVEYEGKVFMPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALASQVTQENYDNGLIFPPFTNIRNISAHIAASVAAKAYDLGLATRLPQPKDLVKFAESCMYTPTYRNYR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0165 590 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 306 589 IPR036291 -
Lal18g0165 590 SMART malic_2 115 296 IPR012301 GO:0004471
Lal18g0165 590 PANTHER MALIC ENZYME-RELATED 23 590 - -
Lal18g0165 590 Pfam Malic enzyme, N-terminal domain 117 296 IPR012301 GO:0004471
Lal18g0165 590 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 28 305 IPR046346 -
Lal18g0165 590 CDD NAD_bind_1_malic_enz 306 584 - -
Lal18g0165 590 PIRSF ME 23 590 IPR001891 GO:0004470|GO:0004471
Lal18g0165 590 Pfam Malic enzyme, NAD binding domain 306 558 IPR012302 GO:0051287
Lal18g0165 590 Gene3D - 49 303 IPR037062 GO:0004471
Lal18g0165 590 PANTHER NADP-DEPENDENT MALIC ENZYME 4, CHLOROPLASTIC 23 590 - -
Lal18g0165 590 Gene3D - 304 590 - -
Lal18g0165 590 SMART Malic_M_2 306 559 IPR012302 GO:0051287
Lal18g0165 590 ProSitePatterns Malic enzymes signature. 302 318 IPR015884 GO:0004471
Lal18g0165 590 PRINTS Malic enzyme signature 121 145 IPR001891 GO:0004470|GO:0004471
Lal18g0165 590 PRINTS Malic enzyme signature 181 210 IPR001891 GO:0004470|GO:0004471
Lal18g0165 590 PRINTS Malic enzyme signature 217 239 IPR001891 GO:0004470|GO:0004471
Lal18g0165 590 PRINTS Malic enzyme signature 277 295 IPR001891 GO:0004470|GO:0004471
Lal18g0165 590 PRINTS Malic enzyme signature 302 318 IPR001891 GO:0004470|GO:0004471
Lal18g0165 590 PRINTS Malic enzyme signature 333 349 IPR001891 GO:0004470|GO:0004471
Lal18g0165 590 PRINTS Malic enzyme signature 436 452 IPR001891 GO:0004470|GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0165 Lal-Chr18 1332273 1336833 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0165 K00029 - gmx:100791514 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0165 18 1332273 1336833 Lal8g0263 8 1765375 1771573 ECH
Lal16g1076 16 7205914 7211742 Lal18g0165 18 1332273 1336833 ECH
Lal23g0593 23 8702825 8708277 Lal18g0165 18 1332273 1336833 ECH
Lal18g0165 18 1332273 1336833 Lal18g0165 18 1332273 1336833 ECH
Lal18g0165 18 1332273 1336833 Lal4g0291 4 1899356 1904394 ECH
Lal18g0165 18 1332273 1336833 Lal10g0754 10 15221590 15223887 ECH
Lal10g1117 10 17984839 17991314 Lal18g0165 18 1332273 1336833 PCT
Lal8g0263 8 1765375 1771573 Lal18g0165 18 1332273 1336833 PCT
Lal18g0165 18 1332273 1336833 Lal10g1117 10 17984839 17991314 PCT
Lal18g0165 18 1332273 1336833 Lal8g0263 8 1765375 1771573 PCT