Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0291 ATGTGGTGGTTTAGTAGGAACAGCCACCATTTCAATATTCTGGCACCACCTATTCTAAAGTTGCAGAGAGTACTAGGTGTGTTAAGTGGAAGTGGTTGTTGTGGAGAAGCAAAGGGTGAGGAAAAGTTGTTGTTGGAAGAGATGTCAAACACATTGAAGGAGAATGGTGAAGGTGTGAGTGATTTGTATGGTGAGGATAGTGCCACTGAGGACCAGCTTATCACCCCATGGAATTTCTCTGTGGCCAGTGGAAGTACTTTGCTGAGAGATCCACGCTACAACAAAGGGCTTGCCTTCACAGAGAACGAAAGAGATGCTCATTACTTGCGCGGCCTTTTGCCTCCAGCCGTATTCACTCAAGATCTTCAGGATAAGAGGATGATGCACAGTCTTCGCCAGTATGAGGTTCCTCTGCATAGGTACACAGCCTTGATGGATCTTCAGGAGAGAAACGAAAGGCTGTTTTACAGGCTGTTGATCGATCATGTTGAGGAACTACTTCCTGTTGTTTACACTCCGACGGTTGGAGAAGCGTGTCAGAAATACGGAAGCATTTATAGGCGACCTCAGGGTCTCTATATCAGTTTGAAGGAGAAGGGTAAGATCCTTGAAGTACTGAAAAACTGGCCAGAGAAGAACATTCAAGTTATTGTTGTGACCGATGGTGAGCGTATATTGGGACTCGGAGATCTTGGTTGCCAGGGCATGGGGATTCCTGTTGGCAAACTTTCTCTCTATACTGCATTAGGAGGTGTTCGCCCTTCAACCTGCCTGCCTATCACCATTGATGTCGGCACAAACAATGAGAAGTTGTTGAATGATGAGTTTTACATTGGGCTCAAACAAAAGCGGGCTACTGGGAAGGAATATGAAGAGCTTCTAGAGGAGTTTATGAGTGCTGTCAAGCAGAACTATGGGGAGAAAGTTCTTGTACAGTTTGAAGATTTCGCAAATCACAACGCATTCACTCTGCTGGAAAAATACAGTTCATCTCATCTTGTTTTTAATGATGATATACAGGGTACCGCATCCGTTGTATTAGCAGGACTAATTGCTTCCCTGAAATTAATCGGGGGAACCTTAGCTGACCACACCTTCTTATTCTTGGGTGCGGGAGAGGCTGGAACTGGTATAGCAGACCTGATTGCTCTTGAGATTTCTAAACAGACAAAAGCTCCGGTGGAAGAGACCCGGAAGAAGATTTGGCTTGTGGACTCAAAGGGACTTATCGTTGGCTCTCGTCTGGAATCACTTCAGCAATTCAAAAAGCCTTGGGCTCATGAGCATGAACCTGTAAAGGGGCTTTTAGATGCAGTCAAGGCAATCAAGCCAACCGTATTGATCGGAACATCTGGAGTAGGGAAGACATTCACCAAGGAGGTGGTTGAAGCTATGGCATCCATTAATGAGAAACCTCTCATTTTTGCTCTCTCCAACCCAACTTCACAATCTGAGTGCACAGCTGAAGAAGCTTATACATGGAGCAAGGGTCGGGCAATTTTTGCCAGTGGAAGCCCATTTGATCCTGTTGAATATGAAGGAAAAGTTTTTGTTCCTGGACAGGGCAACAATGCTTACATATTTCCTGGTTTGGGTTTGGGTTTGATAATGTCTGGTGCTATCCGCGTGCGCGATGAGATGCTCTTGGCAGCCTCTGAAGCTTTGGCTTCACAAGTATCACAGGAGAACTATGATAAGGGACTGATTTACCCTCCATTCACAAACATCAGAAAAATATCTGCTCACATAGCTGCTAACGTCGCAACTAAGGCATATGAACTTGGTCTGGCTTCTCATCTACCTAGACCAAAGGATCTTGTCAAATATGCAGAGAGATGCATGTACAGCCCTGGATACCGTAGCTACCGTTAA 1872 0.4525 MWWFSRNSHHFNILAPPILKLQRVLGVLSGSGCCGEAKGEEKLLLEEMSNTLKENGEGVSDLYGEDSATEDQLITPWNFSVASGSTLLRDPRYNKGLAFTENERDAHYLRGLLPPAVFTQDLQDKRMMHSLRQYEVPLHRYTALMDLQERNERLFYRLLIDHVEELLPVVYTPTVGEACQKYGSIYRRPQGLYISLKEKGKILEVLKNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSTCLPITIDVGTNNEKLLNDEFYIGLKQKRATGKEYEELLEEFMSAVKQNYGEKVLVQFEDFANHNAFTLLEKYSSSHLVFNDDIQGTASVVLAGLIASLKLIGGTLADHTFLFLGAGEAGTGIADLIALEISKQTKAPVEETRKKIWLVDSKGLIVGSRLESLQQFKKPWAHEHEPVKGLLDAVKAIKPTVLIGTSGVGKTFTKEVVEAMASINEKPLIFALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPVEYEGKVFVPGQGNNAYIFPGLGLGLIMSGAIRVRDEMLLAASEALASQVSQENYDKGLIYPPFTNIRKISAHIAANVATKAYELGLASHLPRPKDLVKYAERCMYSPGYRSYR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0291 623 Pfam Malic enzyme, N-terminal domain 148 328 IPR012301 GO:0004471
Lal4g0291 623 PIRSF ME 46 623 IPR001891 GO:0004470|GO:0004471
Lal4g0291 623 Gene3D - 337 623 - -
Lal4g0291 623 Gene3D - 82 336 IPR037062 GO:0004471
Lal4g0291 623 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 339 622 IPR036291 -
Lal4g0291 623 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 65 338 IPR046346 -
Lal4g0291 623 CDD NAD_bind_1_malic_enz 339 617 - -
Lal4g0291 623 Pfam Malic enzyme, NAD binding domain 339 592 IPR012302 GO:0051287
Lal4g0291 623 PANTHER MALIC ENZYME-RELATED 29 623 - -
Lal4g0291 623 SMART Malic_M_2 339 592 IPR012302 GO:0051287
Lal4g0291 623 PANTHER MALIC ENZYME 29 623 - -
Lal4g0291 623 ProSitePatterns Malic enzymes signature. 335 351 IPR015884 GO:0004471
Lal4g0291 623 PRINTS Malic enzyme signature 154 178 IPR001891 GO:0004470|GO:0004471
Lal4g0291 623 PRINTS Malic enzyme signature 214 243 IPR001891 GO:0004470|GO:0004471
Lal4g0291 623 PRINTS Malic enzyme signature 250 272 IPR001891 GO:0004470|GO:0004471
Lal4g0291 623 PRINTS Malic enzyme signature 310 328 IPR001891 GO:0004470|GO:0004471
Lal4g0291 623 PRINTS Malic enzyme signature 335 351 IPR001891 GO:0004470|GO:0004471
Lal4g0291 623 PRINTS Malic enzyme signature 366 382 IPR001891 GO:0004470|GO:0004471
Lal4g0291 623 PRINTS Malic enzyme signature 469 485 IPR001891 GO:0004470|GO:0004471
Lal4g0291 623 SMART malic_2 148 329 IPR012301 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0291 Lal-Chr4 1899356 1904394 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0291 K00029 - gmx:100801564 1052.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0291 4 1899356 1904394 Lal4g0291 4 1899356 1904394 ECH
Lal16g1076 16 7205914 7211742 Lal4g0291 4 1899356 1904394 ECH
Lal23g0593 23 8702825 8708277 Lal4g0291 4 1899356 1904394 ECH
Lal18g0165 18 1332273 1336833 Lal4g0291 4 1899356 1904394 ECH
Lal8g0263 8 1765375 1771573 Lal4g0291 4 1899356 1904394 ECH
Lal10g1117 10 17984839 17991314 Lal4g0291 4 1899356 1904394 ECH
Lal21g0423 21 2925141 2929816 Lal4g0291 4 1899356 1904394 LSH