Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1076 ATGGGAAACTTTTCAATAAACTGTTTTGGCACTTCAAAGAAGATTTCAAAGGATCAAAATAATATTCATAGCAGAGTTAGTGGTGAAAAAGAAGAAAAGAATGTAAGTGGAAGAAAGAAGATAGAGAGTGTACTTAAGGACGTGAAAGGTGGTGAGAGTGTGCTTGACCTCAGTCCAAGATCCACCGTTGTTGGTGATGATGGTGAGGAAATCTATGGTGAAGATTGTGCCACCGAGGACCAACTTGTCACCCCTTTGACTTTCTCTGTTGCAAGTGGCTACTCTTTGCTAAGGGATCCACAATACAACAAAGGGCTTGCTTTCACTGAGAATGAGAGGGATGCACACTATTTGCGTGGCCTCCTCCCTCCAACTGTTACCTCCCAGGAACTTCAGGAGAGGAATGAAAGATTGTTTTACAAACTTCTGATTGATAATGTCGACGAATTGCTCCCAATTGTATATACACCTACTGTTGGTGAAGCTTGCCAGAAATATGGAACCATCTTCCAACGTCCTCAGGGTCTTTACATTAGTTTGAAAGAGAAGGGTAAGATCCTTGAGGTTATGAAAAACTGGCCTCATAAAAGTATTCAAGTTATTGTTGTAACTGATGGTGAGAGGATTCTAGGCCTTGGGGATCTTGGATGTCAGGGGATGGGAATTCCTGTTGGTAAATTAGCTTTATACACAGCGCTAGGAGGATTTCGTCCTTCGGCCTGTTTACCTGTTACAATTGATGTGGGGACAAATAATCAGAAATTACTGAATGATGAGTTTTATATTGGACTTAAACAAAGGAGGGCAACCGGTCAGGAGTATTATGATCTCTTGCATGAGTTCATGTCAGCGGTGAAGCAAAACTATGGAGAAAAGGTTCTTATACAGTTTGAAGATTTTGCAAATCACAATGCTTTTGAGCTGCTTACAAAATATAGCACAAATCATCTCATCTTCAATGATGATATACAGGGGACTGCATCAGTTGTTCTAGCCGGAGTAGTAGCAGCCTTGAAGCTCATTGGGGGTACCCTTCCTGATCACATATTCCTCTTCCTTGGAGCTGGCGAAGCAGGAACAGGTATAGCAGAGCTAATAGCCCTTGAGATGTCAAAGCAGACTAAGGCACCTATAGAAGAGAGTCGCAAGAAGATATTTCTTCTAGATTCAAAGGGTTTAATTGTTAGTTCAAGGAAGAATTCGCTTCAACACTTCAAGAAACCTTGGGCTCATGAACATGAGCCAGTTAAAACTCTCTTAGAAGCTGTTAAGATAATCAAGCCTACAGTGTTGATTGGATCATCAGGAGTGGGGAAAACATTTACAAAGGAAGTGATTGAGGCTATGACTTCAAACAATGAAAAACCTTTCATTCTGGCTCTCTCCAATCCGACTTCGCAGTCTGAGTGTACAGCTGAAGAGGCCTACAAATGGAGTGAGGGTCGTGCAATTTTCGCTAGTGGGAGTCCATTTGATCCCGTTGAATACAACGGCAAAGTCTATTATTCTGGCCAGGCAAACAATGCTTACATTTTCCCAGGCTTTGGTTTGGGTTTAGTAATCTCAGGAGCAATCCGAGTACATGATGATATGCTTTTAGCAGCCTCCGAATCCTTGGCTAAACAAGTCACAGATGAGAACTACGCAAAGGGATTAACTTTCCCACCATTCACTGATATCAGAAAAATTTCAGCCAATATAGCTGCAAATGTTGCTGCCAAGGCATATGAACTAGGCTTGGCTACACTCCTTCCTCGTCCTCAGAATCTTGTGAAATATGCTGAGAGTTGCATGTATTTTCCATTATACTGCAACTATAGGTGA 1824 0.4178 MGNFSINCFGTSKKISKDQNNIHSRVSGEKEEKNVSGRKKIESVLKDVKGGESVLDLSPRSTVVGDDGEEIYGEDCATEDQLVTPLTFSVASGYSLLRDPQYNKGLAFTENERDAHYLRGLLPPTVTSQELQERNERLFYKLLIDNVDELLPIVYTPTVGEACQKYGTIFQRPQGLYISLKEKGKILEVMKNWPHKSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGFRPSACLPVTIDVGTNNQKLLNDEFYIGLKQRRATGQEYYDLLHEFMSAVKQNYGEKVLIQFEDFANHNAFELLTKYSTNHLIFNDDIQGTASVVLAGVVAALKLIGGTLPDHIFLFLGAGEAGTGIAELIALEMSKQTKAPIEESRKKIFLLDSKGLIVSSRKNSLQHFKKPWAHEHEPVKTLLEAVKIIKPTVLIGSSGVGKTFTKEVIEAMTSNNEKPFILALSNPTSQSECTAEEAYKWSEGRAIFASGSPFDPVEYNGKVYYSGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASESLAKQVTDENYAKGLTFPPFTDIRKISANIAANVAAKAYELGLATLLPRPQNLVKYAESCMYFPLYCNYR 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1076 607 Gene3D - 131 320 IPR037062 GO:0004471
Lal16g1076 607 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 323 606 IPR036291 -
Lal16g1076 607 PANTHER MALIC ENZYME 130 607 - -
Lal16g1076 607 PANTHER MALIC ENZYME 40 134 - -
Lal16g1076 607 PANTHER MALIC ENZYME-RELATED 40 134 - -
Lal16g1076 607 PANTHER MALIC ENZYME-RELATED 130 607 - -
Lal16g1076 607 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 72 322 IPR046346 -
Lal16g1076 607 PRINTS Malic enzyme signature 138 162 IPR001891 GO:0004470|GO:0004471
Lal16g1076 607 PRINTS Malic enzyme signature 198 227 IPR001891 GO:0004470|GO:0004471
Lal16g1076 607 PRINTS Malic enzyme signature 234 256 IPR001891 GO:0004470|GO:0004471
Lal16g1076 607 PRINTS Malic enzyme signature 294 312 IPR001891 GO:0004470|GO:0004471
Lal16g1076 607 PRINTS Malic enzyme signature 319 335 IPR001891 GO:0004470|GO:0004471
Lal16g1076 607 PRINTS Malic enzyme signature 350 366 IPR001891 GO:0004470|GO:0004471
Lal16g1076 607 PRINTS Malic enzyme signature 453 469 IPR001891 GO:0004470|GO:0004471
Lal16g1076 607 Pfam Malic enzyme, NAD binding domain 323 575 IPR012302 GO:0051287
Lal16g1076 607 Pfam Malic enzyme, N-terminal domain 132 312 IPR012301 GO:0004471
Lal16g1076 607 ProSitePatterns Malic enzymes signature. 319 335 IPR015884 GO:0004471
Lal16g1076 607 PIRSF ME 67 132 IPR001891 GO:0004470|GO:0004471
Lal16g1076 607 PIRSF ME 127 607 IPR001891 GO:0004470|GO:0004471
Lal16g1076 607 CDD NAD_bind_1_malic_enz 323 601 - -
Lal16g1076 607 SMART malic_2 132 313 IPR012301 GO:0004471
Lal16g1076 607 Gene3D - 321 607 - -
Lal16g1076 607 Gene3D - 91 130 - -
Lal16g1076 607 SMART Malic_M_2 323 576 IPR012302 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1076 Lal-Chr16 7205914 7211742 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1076 K00029 - gmx:100782096 993.416
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1076 16 7205914 7211742 Lal18g0165 18 1332273 1336833 ECH
Lal16g1076 16 7205914 7211742 Lal8g0263 8 1765375 1771573 ECH
Lal16g1076 16 7205914 7211742 Lal10g1117 10 17984839 17991314 ECH
Lal16g1076 16 7205914 7211742 Lal4g0291 4 1899356 1904394 ECH
Lal16g1076 16 7205914 7211742 Lal10g0754 10 15221590 15223887 ECH
Lal16g1076 16 7205914 7211742 Lal16g1076 16 7205914 7211742 ECH
Lal16g1076 16 7205914 7211742 Lal23g0593 23 8702825 8708277 LSH