Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0218 ATGGAGAATCAGAAGGAAACAAAGATTAATCTAGAGAAGTTCACATGGATGATTGAAAGTTTCTCAAAGAACACCAAGAAACTTCAGTCCAAATCTTTTGAAATAGGTGGTTGTAGATGGAGGATCATTATGAATCCAATAGGGAAAGGTGTGGACCAATTATCATTCTGTTTGAAGGTTTCAGGTAGCATACCAACATATAGATGGAGGAAATTTGCATATTTCAAGTTGGCTCTAGTTAATCAAATGGATAGAGAGAAATCAATTGTAAGAGAGACTCAACAGAAGTTCAACACCGGATATCGAATTTGGGGTTCATCATTCATAAATCTCAGTGACTTCTATAATCCTAAAGAAGGGTATCTCATAAATGACAAATGCATCATTGAAGCCCATGTTACTGTCTCTGATAATGAATTTAAGATTACTATTCCATCTCTAACACATAGTGTCTCTATAGCTGCACAAACAGAATGTTCAGAAGAGACAATGAGTTCCACAACCCAAACAGAACTAGAACTTCAATCTCAAGAAGATTTTGGAATTGTCATTCCACCCTTAGAAGAGACACCAAGTCCTAAAAATTTACACTTTGACATCATAATACCATCCTTAGAAGATACACAAAGTCCTAAACAACCATATTATAATCCTACAGCTCCCCCATTTTACCCTCCTATATATGATGATGAACCTAAGGTAGAGCCCTTAATCCACCTTAGTGAGGTCCTAGATATCAATAGTTTAGGACCAGAAGAAGCAGCTTTTTTTCCTTTATTGGAAGAGGTTTGTTTGAAGCATCCTTCATTGATAGAAAGCCTAATGAGAAAAAGTCCAAAGTACATTCTATGGTCATTCATAGCATTGGGTCAAGTTCTTTATTTTCTTAAGACTATGAAGGTGAAGAATATGAAGGAGGAAGCATGCAAACATCTTCAGTGTCTATGGGAAGAAGTTCAGTTATTTGGATTTAACTTGAGTTGGTTGGAGCCATATATTGAAGCTGCATTGAATGTTAAAGCCTATTTGGAAAAGGCAGAGAAAGTGAAAATTCTTAAAGAAAGTGTGGTTGATTTTGAGATTGAATTAAGGAAATTAAGAACAAAACTAGATGTTGCAGAAGTAGATCTTGAGATAGCAATGAGAGACTTGGAAGAGGTTGAAAATGGTTTTGAAGAGAGGGACATTAATGCAGAATTGGGTTATGGAACATGA 1215 0.3572 MENQKETKINLEKFTWMIESFSKNTKKLQSKSFEIGGCRWRIIMNPIGKGVDQLSFCLKVSGSIPTYRWRKFAYFKLALVNQMDREKSIVRETQQKFNTGYRIWGSSFINLSDFYNPKEGYLINDKCIIEAHVTVSDNEFKITIPSLTHSVSIAAQTECSEETMSSTTQTELELQSQEDFGIVIPPLEETPSPKNLHFDIIIPSLEDTQSPKQPYYNPTAPPFYPPIYDDEPKVEPLIHLSEVLDINSLGPEEAAFFPLLEEVCLKHPSLIESLMRKSPKYILWSFIALGQVLYFLKTMKVKNMKEEACKHLQCLWEEVQLFGFNLSWLEPYIEAALNVKAYLEKAEKVKILKESVVDFEIELRKLRTKLDVAEVDLEIAMRDLEEVENGFEERDINAELGYGT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0218 404 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 11 387 - -
Lal20g0218 404 SUPERFAMILY TRAF domain-like 13 138 - -
Lal20g0218 404 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 11 387 - -
Lal20g0218 404 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1 140 IPR008974 GO:0005515
Lal20g0218 404 Coils Coil 349 390 - -
Lal20g0218 404 Pfam MATH domain 20 135 IPR002083 GO:0005515
Lal20g0218 404 ProSiteProfiles MATH/TRAF domain profile. 11 133 IPR002083 GO:0005515
Lal20g0218 404 CDD MATH 13 134 IPR002083 GO:0005515
Lal20g0218 404 SMART math_3 13 114 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0218 Lal-Chr20 1529160 1531923 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0218 - - lang:109347098 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0218 20 1529160 1531923 Lal13g0880 13 6047863 6076984 ECH
Lal20g0218 20 1529160 1531923 Lal24g0695 24 5158719 5184887 ECH
Lal20g0218 20 1529160 1531923 Lal20g0218 20 1529160 1531923 ECH
Lal20g0218 20 1529160 1531923 Lal18g1444 18 16489215 16503167 ECH
Lal20g0218 20 1529160 1531923 Lal6g0181 6 1248885 1263611 ECH
Lal1g1714 1 19575554 19577523 Lal20g0218 20 1529160 1531923 LSH
Lal13g1253 13 10934455 10936525 Lal20g0218 20 1529160 1531923 PCT