Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0880 ATGTCTACTACGCCATTGAACAATCAGCAGGAGGACGAAGAAATGGTGGTTCCTAACTCGGATGTCGCTGAAGGTCCTCAGCCAATGGAAATAGCTCATGCAGAAGACATGGGTACAGTTGATGCACCGACAGTGGATGATTCACCATCTGGGAGGTTTACATGGACCATCGAGAATTTTTCAAGGCTTACAAGGAAAGTATATTCTGATGATTTCTATATTGGGGGCTATAAATGGCGGATACTTATCTTTCCAAAGGGGAACAATGTTGATCATTTGTCGATGTATCTAGATGTTGCAGATTCTACGACATTGCCTTATGGATGGACTAGATATGCCCAATTCAGCTTGACCGTTGTCAATCAAATTCAGAGTAAATACTCAGTCAGAAAAGAAACACAGCATCAGTTCATTGCTCGTGAGAGTGATTGGGGCTTTACTAATTTTATGCCTGTTGCTGAATTGAGTGATTCTAGTAGAGGTTATGTTGTGAATGATACATGTATAGTTGAGGCTGATATTGCTGTACGTAAGGCTAGTGATTACTGGTCAAATGACTCAAAAAAGGAAACTGGTTATGTTGGACTGAAAAACCAAGGAGCTACTTGTTACATGAATTCTCTCCTTCAAACATTGTACCACATTCCTTATTTTAGAAAGGCTGTGTACCATATGCCTACAACCGAGAATGATATGCCATCGGGGAGCATTCCTCTGGCATTACAGAGTTTATTCTACAAGCTGCAGTACAGTGAGAGTAGTGTAGCAACAAAAGAGTTGACCAAGTCTTTTGGATGGGATTCATATGATTCATTCACGCAGCATGATGTCCAAGAGCTTAATAGGGTTCTTAGTGAAAAGCTGGAAGACAAAATGAAGGGAACTGTTGTGGAAGGCACCATACAACATTTGTTTGAAGGCCACCATATGAACTATATTGAATGCATCAATGTAGACTATAAATCGACAAGAAGAGAATCATTTTATGATCTTCAGCTTGATGTCAAAGGATGTCGGGATGTGTATGATTCGTTCAACAAGTATGTAGAAGTGGAAAGGCTTGAGGATGATAACAAATATCATGCGGAGCAGTATGGTTTACAGGAGGCTAGGAAGGGTGTGTTGTTCATTGATTTTCCACCTGTCCTTCAGCTTCAATTAAAACGATTTGAATATGATTTTATGCGCGACACTATGGTAAAGATCAATGACCGCTACGAGTTCCCATTGCAATTAGATCTTGATAGGGATGATGGCAAGTATCTATCTCCTGAAGCAGATAACAGTGTTCGCAATCTTTATACACTTCACAGTGTTTTGGTTCACAGTGGTGGGGTTCATGGTGGACACTACTATGCTTATATAAGGCCAACTCTATCAAATCAGTGGTTTAAATTTGATGATGAACGAGTAACGAAAGAAGATGCAAAGAGAGCCTTAGAAGAACAGTATGGTGGTGAAGAAGAGTTGCCTCATACCAATCCTGGATTCAACAACTCTCCCTTTAAATTTACAAGGTACTCAAATGCATATATGCTTGTCTATATACGTGACAGTGACAAGGAGAAGGTAATTTGTAGTGTGGATGAGAAGGACGTCGCCCAACATGTCAGAGTAAGATTACAGAAAGAACAAGAAGAAAAAGAGCAGAAGAGGAAAGAGAAGGAAGAGGCTCACTTGTACACTATCATAAAGGTTGCATGTGATGCAGATCTGCACAAACAGATTGGAAAGGATACATTTTTCGATCTAGTGGATCATGATAAAGTGCAGAGTTTTCGTATTCGGAAACAAATCCCATTTATCACTTTTAAGGAAGAAGTTGCTAAAGAGTTTGGTGTACCTATCATATACCAGCGATTTTGGCTGTGGGCAAAGCGCCAAAATCATACTTACCGGCCAAACAGACCACTGACACCTCAGGAAGAAACACAATCTGTTGGACAGTTAAGAGATGTTTACAATAAGGCAAATAATGCAGAGCTGAAGTTATTTTTGGAAGTGGGACAGGATTTTGGGCCTATTCCTCTTCCTGGGAAGCGAAAAGAAGATTTGCTGCTATTCTTTAAGCTTTATGATCCTTCGAATGAGACACTTCGGTATATTGGGAGGTTGCATGTGACAGGTAGTGGGAAGCCCATGGACATTTTGACAAAACTAATTGAAATGGCTGGATTTGCTCTTGATGAAGAAATTGAACTTTTTGAGGAAATCAAATCTGAACCTCATGTCATGTGCGAACATGTTGACATTAATGTCACATTCCATGCAAATCAGCTTGAGGATGGTGATATTATTTGCATCCAGAAGACACTGGTTGAAAATGGTGAGCAATTTCGCTATCCAGATGTTCCTTCGTTTTTGGAATATGTGCATAATCGTCAGGTAGTGCGCTTCCGGTACTTGGAGAAACCAAAAGAGGATGAGTTCAGTCTTGAGTTGTCAAAGATTCACACATATGACGACGTTGTAATAGGAGTTGCTGAACATCTTGGTTTGGATGATCCTTCTAAAATCAGACTCACATCTCATAACTGCTACTCCCAGCAACCTAAACCACAGCCTATCAAGTACCGAGGAGTAGAACATTTGTCTGACATGCTGGCTAACTGCAATCAGACCTCTGATATTTTGTACTATGAAGCATTGGATATACCTCTGCCGGAATTACAATGCCTTAAAACGCTTAGAATTGCTTTCCATAATGCTACCAAGGATGAAGTGGTGATTCATACTATCAGATTACCAAAGCAGAGTGCAGTGGAAGATGTAATTAATGATCTCAAATCAAAGGTGGATTTATCACATCCAGGTGCAGAAATTAGATTGCTCGAAGTTTTGTATCACAAGATCTATAAGGTTTTCTCTCTCAACGACATGATTGATAATATCAATGATCAGTATTGGACTTTAAGAGCAGAAGAGGTTCCCGAAGACGAGATAAATCTAGGCCCTCGTGATCGGTTGATCCATGTTTATCATTTCATGAAAGACACTGCACAAAATCAGGTGCAAGTTCAGAATTTTGGAGATCCTTTTTTCCTGGTTATTCATGAAGGTGAGACACTAGCTGATATTAAATTAAGGATACAGAAAAAGTTGCAAGTTCCAGATGAGGACTTTTCAAAGTGGAAGTTTGCATTTGTGTCACTTGGTCGCCCTGAGTACCTTCAAGATTTAGATATTGTTTCTACTCGGTTTCAGAGAAGAGATATCTATGGCGCTTGGGAGCAATATCTTGGACTGGAACATGCTGGCAATTCCCCAAAACGGTCGTATGCTATCAACCAGAACCGCCACTCATTTGAGAAAGCAGTAAAAATCTACAACTAG 3333 0.4005 MSTTPLNNQQEDEEMVVPNSDVAEGPQPMEIAHAEDMGTVDAPTVDDSPSGRFTWTIENFSRLTRKVYSDDFYIGGYKWRILIFPKGNNVDHLSMYLDVADSTTLPYGWTRYAQFSLTVVNQIQSKYSVRKETQHQFIARESDWGFTNFMPVAELSDSSRGYVVNDTCIVEADIAVRKASDYWSNDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSESSVATKELTKSFGWDSYDSFTQHDVQELNRVLSEKLEDKMKGTVVEGTIQHLFEGHHMNYIECINVDYKSTRRESFYDLQLDVKGCRDVYDSFNKYVEVERLEDDNKYHAEQYGLQEARKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRDDGKYLSPEADNSVRNLYTLHSVLVHSGGVHGGHYYAYIRPTLSNQWFKFDDERVTKEDAKRALEEQYGGEEELPHTNPGFNNSPFKFTRYSNAYMLVYIRDSDKEKVICSVDEKDVAQHVRVRLQKEQEEKEQKRKEKEEAHLYTIIKVACDADLHKQIGKDTFFDLVDHDKVQSFRIRKQIPFITFKEEVAKEFGVPIIYQRFWLWAKRQNHTYRPNRPLTPQEETQSVGQLRDVYNKANNAELKLFLEVGQDFGPIPLPGKRKEDLLLFFKLYDPSNETLRYIGRLHVTGSGKPMDILTKLIEMAGFALDEEIELFEEIKSEPHVMCEHVDINVTFHANQLEDGDIICIQKTLVENGEQFRYPDVPSFLEYVHNRQVVRFRYLEKPKEDEFSLELSKIHTYDDVVIGVAEHLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVEHLSDMLANCNQTSDILYYEALDIPLPELQCLKTLRIAFHNATKDEVVIHTIRLPKQSAVEDVINDLKSKVDLSHPGAEIRLLEVLYHKIYKVFSLNDMIDNINDQYWTLRAEEVPEDEINLGPRDRLIHVYHFMKDTAQNQVQVQNFGDPFFLVIHEGETLADIKLRIQKKLQVPDEDFSKWKFAFVSLGRPEYLQDLDIVSTRFQRRDIYGAWEQYLGLEHAGNSPKRSYAINQNRHSFEKAVKIYN 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0880 1110 Pfam MATH domain 57 175 IPR002083 GO:0005515
Lal13g0880 1110 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 195 210 IPR018200 GO:0004843|GO:0006511
Lal13g0880 1110 Gene3D - 794 891 - -
Lal13g0880 1110 MobiDBLite consensus disorder prediction 1 25 - -
Lal13g0880 1110 MobiDBLite consensus disorder prediction 1 15 - -
Lal13g0880 1110 Gene3D Cysteine proteinases 190 519 - -
Lal13g0880 1110 SMART math_3 52 155 IPR002083 GO:0005515
Lal13g0880 1110 Pfam Ubiquitin carboxyl-terminal hydrolase 194 515 IPR001394 GO:0004843|GO:0016579
Lal13g0880 1110 Pfam Ubiquitin-specific protease C-terminal 878 1087 IPR029346 -
Lal13g0880 1110 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 194 518 IPR028889 -
Lal13g0880 1110 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 1037 - -
Lal13g0880 1110 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 434 451 IPR018200 GO:0004843|GO:0006511
Lal13g0880 1110 PANTHER UBIQUITIN-SPECIFIC PROTEASE 12-RELATED 10 1037 - -
Lal13g0880 1110 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 619 868 IPR024729 -
Lal13g0880 1110 ProSiteProfiles MATH/TRAF domain profile. 50 174 IPR002083 GO:0005515
Lal13g0880 1110 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 47 189 IPR008974 GO:0005515
Lal13g0880 1110 SUPERFAMILY TRAF domain-like 49 179 - -
Lal13g0880 1110 Coils Coil 534 561 - -
Lal13g0880 1110 CDD peptidase_C19C 192 520 - -
Lal13g0880 1110 CDD MATH 51 174 IPR002083 GO:0005515
Lal13g0880 1110 SUPERFAMILY Cysteine proteinases 189 548 IPR038765 -
Lal13g0880 1110 Gene3D - 678 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0880 Lal-Chr13 6047863 6076984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0880 183 471 Miscellaneous Gene Families AT4G31670 25.478 5.57e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0880 K11838 - pop:7491593 1882.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0218 20 1529160 1531923 Lal13g0880 13 6047863 6076984 ECH
Lal1g1714 1 19575554 19577523 Lal13g0880 13 6047863 6076984 ECH
Lal13g1254 13 10995701 10999405 Lal13g0880 13 6047863 6076984 ECH
Lal13g0880 13 6047863 6076984 Lal13g0880 13 6047863 6076984 ECH
Lal13g0880 13 6047863 6076984 Lal24g0695 24 5158719 5184887 LSH