Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0695 ATGCCTCCTCCGCCATTAGATAATCAGCAGGACGAGGACGTGGAAATGGTGGTTCCGAACTCGGATATCCCTGACGGTCCTCAGCCAATGGAAGGAAGCGCTAGATTTGCTTCGGTTATAGGGTTTGGAGTGAAGCAATACATAAGTGGCACACTCATGATTTTGTTTGATAGGGGAATGAATAATTTAGATACTGGAGAGTTTTTCTCTTCATCACATGTTGATTGCGGAGTAGCCCACACAGAAGATATGAGTACAGCTGATGTACCAATAGTGGATGATTCACTGTCCGGGAGGTTCACATGGACCATAGAGAACTTTTCAAGGCTTACAAGGAAAGTATATTCTGACGATTTTTATGTTGGGGGCTACAAATGGCGGATACTCATCTTTCCAAAAGGGAACAATGTTGATCATTTGTCGATGTATCTAGATGTTGCAGATTCAACGACATTGCCTTATGGATGGACTAGATATGCCCAATTCAGCTTGTCCATTGTTAATCAAATTCAGAGTAAATACTCAGTCAGAAAAGAAACACAGCACCAGTTTACTGCTCGTGAGAGCGATTGGGGTTTTACTAGTTTTATGCCTATTGCTGAATTGAGTGATTCTAGTAGAGGTTATGTTGTGAATGATACATGCATAGTTGAGGCTGATGTTGCTGTGCGTAAGGCTAATGATTACTGGTCACATGACTCAAAAAAGGAAACTGGTTATGTTGGACTAAAAAACCAAGGAGCTACCTGTTACATGAATTCTCTCCTTCAGACATTGTATCACATTCCTTATTTTAGAAAGGCTGTGTACCATATGCCTACAACTGAGAACGATATGCCATCAGGGAGCATTCCTCTGGCATTACAGAGTTTATTCTACAAGCTGCAGTACAGTGACAGTAGTGTAGCAACAAAAGAGTTGACCAAATCTTTTGGATGGGATACATATGATTCATTCACACAGCATGATGTTCAAGAGCTTAATAGGGTTCTTAGCGAAAAGCTGGAAGACAAAATGAAGGGAACTGTTGTGGAAGGCACCATACAACAGTTGTTTGAAGGCCACCATATGAACTATATCGAATGCATCAATGTAGACTATAAATCGACAAGAAGGGAATCATTTTATGACCTCCAGCTTGATGTCAAAGGATGTAGAGATGTGTATGATTCTTTCGACAAGTATGTGGAAGTCGAACGACTTGAGGGTGATAACAAGTATCATGCTGAGCAGTACGGTTTACAGGAGGCTAGGAAGGGTGTCTTGTTCATTGATTTCCCACCTGTCCTCCAGCTTCAATTAAAACGGTTTGAGTATGATTACATGCGTGACAATATGGTAAAGATCAATGACCGCTATGAGTTCCCCTTGCAATTAGATCTTGATAGGGACAATGGCAAGTATCTATCTCCTGAAGCAGATAGAAGTGTTCGCAATCTCTATACACTTCACAGTGTCTTGGTTCATAGTGGTGGGGTTAATGGCGGACACTACTACGCTTACATAAGGCCAACTCTATCAAATCAGTGGTTTAAATTTGATGATGAACGAGTAACGAAAGAAGTTGCAAAGAGGGCCTTAGAAGAACAGTATGGTGGCGAGGAAGAGTTACCTCATACCAACCCTGGGTTCAACAACTCTCCCTTTAAATTTACAAGGCACTCAAATGCATATATGCTTGTGTATATACGTGACAGTGACAAGAACAACATAATTTGTAGCGTGGATGAGAAAGACATTGCCCAACACCTCATAGTAAGGTTAAAGAAAGAACAAGAAGAAAAAGAGCAGAAGAGGAAGGAGAAGGAAGAGGCTCACTTGTACACTATCTTAAAGGTTGCACGCGATGCAGATCTGCACCAACAGATTGGAAAGGATATATTTTTTGATCTAGTGGATCATGATAAAGTGCGGACTTTTCGTATTCGAAAACAAACTCCCTTTATCACTTTTAAGGAAGAAGTTGCTAGAGAGTTTGGTATACCTATCATGTACCAACGATTTTGGTTGTGGGCAAAGCGCCAAAATCATACTTACCGGCCAAACAGACCACTGACTCCTCAGGAAGAAACACAATCTGTTGGACATTTAAGAGATGTTTACAATAAGGCAAGTAATGCAGAGCTGAAGTTATTTTTGGAAGATGGACAGGACTTTGGGCTTATTCGTCCTCCTGAGAAGCGAAAAGAAGATTTGTTGCTATTCTTTAAACTTTATGATACTTCAAATGAGACACTCCGGTATATTGGGAGGTTGCATGTGGCAGGTAGTGGGAAGCCCATGGACATATTGACAAAACTAAATGAAATGGCAGGATTTGCTCTTGATGAAGAAATTGAACTTTTTGAGGAAATAAAATATGAACCTCGTGTCATGTGCGAACATGTTAACAAGAATGTCACATTCCATGCCAATCAGCTTGAGGATGGAGATATTATTTGCATCCAGAAGTCTCCTGTTGGAAGTGGTGAGCAATTTCGCTATCCGGATGTTCCTTCGTTTTTGGAATATGTTCATAATCGTCAGGTCGTACGCTTCCGTTACTTGGAGAAACCAAAAGAGGATGAATTCAGTCTTGAGTTATCAAAGATTCACACATATGACGATGTTGTAATAAGAGTTGCTGAATACCTTGGTTTGGATGATCCTTCTAAAATCAGACTCACATCTCATAACTGCTACTCCCAGCAACCTAAACCACACCCTATCAAGTACCAAGGAGTAGAACATTTGTCTGACATGCTGACTAGCTCCAATCAGAGGCATGACACCTTTGATGTTTGCATTGTTGTTGTCGAGTCTTCTCATAGAAATCAGGAGGCATTTTTCTCAGTCAGGATCAATTGGAGTCCTGTCGTTGGTGTAGGACAGGATAGAGAGGCAATCATGATAATTAAAGGGACTTCTGATATTCTGTACTATGAAGCATTGGATATCCCACTGCCGGAATTGCAATGCCTTAAAACACTTAAAATTTCTTTCCACCATGCTACCAAGGATGAAGTGGTGATTCATACTATCAGATTACCGAGGCAGAGTGCAGTGGAAGATGTAATTAATGATCTCAAATCAAAGGTGGATTTATCACATCCTGGTGCAGAACTTAGGTTGCTCGAAATTTTGTATCACAAGATCTATAAGATTTTCCCTCTCAGTGAAATGATTGATAATATCAACGATCAGTATTGGACCTTGAGAGCAGAAGAGATACCCGAAGAGGAGAAAAATCTAGGCCCTCGTGACCGTTTGATCCATGTTTATCATTTCATGAAAGACACTGCACAGAATCAGGTGCAACTTCAGAATTTTGGAGATCCTTTTTTCCTGGTTATTCATGAAGGTGAGACACTTGCTGATATTAAATTGCGGATACAGAAAAAGTTGCAAGTTCCAGATGAGGACTTTTCAAAGTGGAAGTTTGCATTTGTGTCACTTGGTCGTGCTGAGTACCTTCAAGATTCAGATATTATTTCTACTCGGTTTCAGAGAAGAGATATCTATGGTGCTTGGGAGGAATATCTTGGATTGGAACATGCTGACAATTCTCCAAAAAGGTCCTACATTGCCAACCAGAACCGTCACTCATATGAGAAGGCTGTAAAAATCTACAACTAG 3615 0.4058 MPPPPLDNQQDEDVEMVVPNSDIPDGPQPMEGSARFASVIGFGVKQYISGTLMILFDRGMNNLDTGEFFSSSHVDCGVAHTEDMSTADVPIVDDSLSGRFTWTIENFSRLTRKVYSDDFYVGGYKWRILIFPKGNNVDHLSMYLDVADSTTLPYGWTRYAQFSLSIVNQIQSKYSVRKETQHQFTARESDWGFTSFMPIAELSDSSRGYVVNDTCIVEADVAVRKANDYWSHDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDSSVATKELTKSFGWDTYDSFTQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRRESFYDLQLDVKGCRDVYDSFDKYVEVERLEGDNKYHAEQYGLQEARKGVLFIDFPPVLQLQLKRFEYDYMRDNMVKINDRYEFPLQLDLDRDNGKYLSPEADRSVRNLYTLHSVLVHSGGVNGGHYYAYIRPTLSNQWFKFDDERVTKEVAKRALEEQYGGEEELPHTNPGFNNSPFKFTRHSNAYMLVYIRDSDKNNIICSVDEKDIAQHLIVRLKKEQEEKEQKRKEKEEAHLYTILKVARDADLHQQIGKDIFFDLVDHDKVRTFRIRKQTPFITFKEEVAREFGIPIMYQRFWLWAKRQNHTYRPNRPLTPQEETQSVGHLRDVYNKASNAELKLFLEDGQDFGLIRPPEKRKEDLLLFFKLYDTSNETLRYIGRLHVAGSGKPMDILTKLNEMAGFALDEEIELFEEIKYEPRVMCEHVNKNVTFHANQLEDGDIICIQKSPVGSGEQFRYPDVPSFLEYVHNRQVVRFRYLEKPKEDEFSLELSKIHTYDDVVIRVAEYLGLDDPSKIRLTSHNCYSQQPKPHPIKYQGVEHLSDMLTSSNQRHDTFDVCIVVVESSHRNQEAFFSVRINWSPVVGVGQDREAIMIIKGTSDILYYEALDIPLPELQCLKTLKISFHHATKDEVVIHTIRLPRQSAVEDVINDLKSKVDLSHPGAELRLLEILYHKIYKIFPLSEMIDNINDQYWTLRAEEIPEEEKNLGPRDRLIHVYHFMKDTAQNQVQLQNFGDPFFLVIHEGETLADIKLRIQKKLQVPDEDFSKWKFAFVSLGRAEYLQDSDIISTRFQRRDIYGAWEEYLGLEHADNSPKRSYIANQNRHSYEKAVKIYN 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0695 1204 Gene3D - 724 840 - -
Lal24g0695 1204 CDD peptidase_C19C 239 567 - -
Lal24g0695 1204 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 95 236 IPR008974 GO:0005515
Lal24g0695 1204 PANTHER UBIQUITIN-SPECIFIC PROTEASE 12-RELATED 127 924 - -
Lal24g0695 1204 PANTHER UBIQUITIN-SPECIFIC PROTEASE 12-RELATED 967 1126 - -
Lal24g0695 1204 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 967 1126 - -
Lal24g0695 1204 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 127 924 - -
Lal24g0695 1204 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 241 565 IPR028889 -
Lal24g0695 1204 ProSiteProfiles MATH/TRAF domain profile. 97 221 IPR002083 GO:0005515
Lal24g0695 1204 SMART math_3 99 202 IPR002083 GO:0005515
Lal24g0695 1204 Gene3D Cysteine proteinases 237 566 - -
Lal24g0695 1204 Pfam Ubiquitin-specific protease C-terminal 972 1183 IPR029346 -
Lal24g0695 1204 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 242 257 IPR018200 GO:0004843|GO:0006511
Lal24g0695 1204 Pfam MATH domain 104 222 IPR002083 GO:0005515
Lal24g0695 1204 Coils Coil 578 608 - -
Lal24g0695 1204 CDD MATH 98 221 IPR002083 GO:0005515
Lal24g0695 1204 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 666 915 IPR024729 -
Lal24g0695 1204 Gene3D - 841 985 - -
Lal24g0695 1204 SUPERFAMILY TRAF domain-like 96 225 - -
Lal24g0695 1204 SUPERFAMILY Cysteine proteinases 236 594 IPR038765 -
Lal24g0695 1204 Pfam Ubiquitin carboxyl-terminal hydrolase 241 562 IPR001394 GO:0004843|GO:0016579
Lal24g0695 1204 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 481 498 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0695 Lal-Chr24 5158719 5184887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0695 348 520 Miscellaneous Gene Families AT2G24640 29.213 6.13e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0695 K11838 - jre:109019926 1869.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0218 20 1529160 1531923 Lal24g0695 24 5158719 5184887 ECH
Lal1g1714 1 19575554 19577523 Lal24g0695 24 5158719 5184887 ECH
Lal13g1254 13 10995701 10999405 Lal24g0695 24 5158719 5184887 ECH
Lal24g0695 24 5158719 5184887 Lal24g0695 24 5158719 5184887 ECH
Lal13g0880 13 6047863 6076984 Lal24g0695 24 5158719 5184887 LSH