Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1253 ATGGAGAATCAACAAACAAGTGATGAAACAGCTGAGAAGTTTACATGGACGATCAAGAACTTTTCGAAATTGAGCTCCAAGCTCTACTCTGAGAATTTCTTCATTGGAGTTTCGGAAACTTCTAAAACCTTGAAGTTTAGGACAATTGTGGACATGTGGTCTACCCTGCCACACTTGGTTTCTGCAGCTCTCAAAATCTTGATGCGGATCCTTATGTTTCCAAAGGGTAACAATGTGGACTACTTATTATCCATTTACTTGGATGCCGGTGACTCTGCTAATTTGCCTTATGGCTGGAGCAGATTCGCAAAATTCAAGTTGAGTCTAATTAATAAGGTCAATAGCAATATGAAAAAAACAAAAGAAACTGAACATGAATTCAATGCAAGAGAGAATGACTGGGGTTTCACGGCATTCATGCCTTTACATGAAATTTTGGACCCTAGCACAGGCTTTATTGTGGATGATACTTGCATAATTGAAGCTGAGATTTTTGTTACCAAACTAGAACATGAGAATCAGGTCGATCAAGCAGCCAAAACTGATACTGTAACTCCGGTTTCAACACAGGTTAATGCTGTGTCTGATAATCCTTCACCTAAGGAAATGTCCTCTACCTCATTGGGTGAACTCATGGATTTTAGGGGCTTAGGGAAAATAGAACAAGCTTTTGTTCCGCTACTGGAAGAAGTATGTTCACGACATCCATCTCTTATCGAATGTCAGCAGAAGAGAAGTCGTAGGTTTATTGAATGGGCATTTGCAGCTTTGGGTCGAGTTCTACATTTCCTGAAGACTAAAAAAGTTAAAGATATGAATGATGCTCTCTTTATGCATCTTCAAATTTTATGGAAGGAGCTTGAGACATTTAAATTTGATTTGACTTGGCTGGAGCCCCATGTTCAATCTGCCTTAGGCATGAAAAGTTATATGGAGAGAGCAGCAGAGGTAAAAAAGATGAAGGACAATGTGGTTGCTCGAGAGATGGAAATCAAGAGGCTGAAGACAAAGATTACTGCTGCTGAGATAGATCTTGAAATAGCAAAAAGAGAATTGATGAAAGCTGAAGAAGGCTTCGAAGAACGAGATTTGGATGGCGAACTAGGATATGAAGCATAG 1119 0.395 MENQQTSDETAEKFTWTIKNFSKLSSKLYSENFFIGVSETSKTLKFRTIVDMWSTLPHLVSAALKILMRILMFPKGNNVDYLLSIYLDAGDSANLPYGWSRFAKFKLSLINKVNSNMKKTKETEHEFNARENDWGFTAFMPLHEILDPSTGFIVDDTCIIEAEIFVTKLEHENQVDQAAKTDTVTPVSTQVNAVSDNPSPKEMSSTSLGELMDFRGLGKIEQAFVPLLEEVCSRHPSLIECQQKRSRRFIEWAFAALGRVLHFLKTKKVKDMNDALFMHLQILWKELETFKFDLTWLEPHVQSALGMKSYMERAAEVKKMKDNVVAREMEIKRLKTKITAAEIDLEIAKRELMKAEEGFEERDLDGELGYEA 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1253 372 CDD MATH 13 164 IPR002083 GO:0005515
Lal13g1253 372 ProSiteProfiles MATH/TRAF domain profile. 11 164 IPR002083 GO:0005515
Lal13g1253 372 Coils Coil 317 358 - -
Lal13g1253 372 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 7 184 IPR008974 GO:0005515
Lal13g1253 372 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 6 37 - -
Lal13g1253 372 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 69 355 - -
Lal13g1253 372 SMART math_3 13 145 IPR002083 GO:0005515
Lal13g1253 372 Pfam MATH domain 19 166 IPR002083 GO:0005515
Lal13g1253 372 SUPERFAMILY TRAF domain-like 13 168 - -
Lal13g1253 372 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 6 37 - -
Lal13g1253 372 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 69 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1253 Lal-Chr13 10934455 10936525 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1253 - - adu:107476101 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1253 13 10934455 10936525 Lal1g1714 1 19575554 19577523 PCT
Lal13g1253 13 10934455 10936525 Lal20g0218 20 1529160 1531923 PCT