Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1444 ATGACCATCATGACACCTGCTCCCATTGACCAGCAGGAGGATGAGGAGATGCTTGTCCCACATACAGATTTGGCTGAGAATAATCACCAACCCATGGAGGTTGTGGCTCAACCTGAAACTGCCAACAACACTGTGGAGAGTCAGCCTGTCGAGGATCCTCCATCATCAAGATTCACATGGAGAATTGATAACTTTTCTAGGATGAATACAAAAAAGCTCTATTCAGAAGTATTTGTTGTTGGTGGTTATAAATGGCGTGTGCTTATTTTTCCAAAAGGGAACAATGTGGACTATTTATCCATGTATTTGGATGTTGCAGACTCAACTAGTCTGCCCTACGGCTGGAGTAGATATGCACAGTTTAGCTTGGCAATTGTTAATCAAATTCAGAATAAGTACTCTGTGAGGAAAGACACACAACACCAATTCAATGCACGAGAAAGTGATTGGGGTTTCACGTCCTTCATGCCACTTGGTGAATTATATGATCCTTCTAGAGGGTATCTTGTGAATGATACTCTTATAGTTGAAGCCGAGGTTCTTGTTCGTAAGATTGTCGATTACTGGACTTATGATTCAAAGAAGGAGACTGGCTATGTTGGCCTTAAGAACCAGGGAGCTACGTGTTATATGAATTCTTTACTCCAAACCTTGTACCATATTCCTTATTTTCGAAAGGCTGTGTACCATATGCCAACTACAGAGAATGATATGCCCTCTGGAAGCATCCCTTTGGCTCTTCAAAGTTTATTCTACAAGCTCCAGTATAGTGATACCAGTGTTGCTACAAAGGAGCTGACAAAATCTTTTGGATGGGATACATATGATTCTTTCATGCAGCATGATGTTCAAGAACTAAATAGAGTCCTCTGTGAAAAACTTGAAGACAAAATGAAGGGAACTGTTGTTGAGGGAACTATACAGAAATTATTTGAAGGGCACCATATGAACTATATTGAGTGCATCAATGTGGACTACAAATCAACTAGGAAGGAGTCATTTTATGACCTTCAGCTTGATGTCAAAGGCTGTCGTGATGTTTATGCTTCCTTTGACAAGTATGTTGAAGTTGAACGGCTTGAGGGGGATAATAAATATCAAGCTGAACAATATGGGTTGCAGGATGCTAAGAAGGGGGTCCTATTTATTGATTTTCCACCTGTCCTGCAGCTTCAGTTGAAAAGATTTGAATATGACTTTATGCGCGATACTATGATTAATGACCGTTACGAATTTCCCTTGCAACTTGACCTTGATCGTGAGAATGGAAAGTATTTATCACCCGACGCTGACAGGACTGTCCGCAATCTTTACACACTTCACAGTGTTCTGGTTCACAGTGGTGGTGTGCATGGTGGACATTATTATGCTTTTATAAGGCCAACTCTCTCTGAGCAGTGGTACAAATTTGATGATGAGAGGGTGACAAAAGAAGACATTAAACGGGCATTAGAGGAGCAATATGGTGGCGAGGAGGAGTTACCACAGACAAATCCTGGATTCAATAACACTCCTTTTAAGTTCACCAAATATTCAAATGCTTATATGCTGGTGTATGTTCGTGAAACTGACAAGGACAAAATAATATGCAATGTGGACGAGAAAGATATTGCTGAACATTTAAGGGAGAGGTTGAAGAAAGAGCAGGAAGAGAAAGAGCACAAAAAGAAAGAAAAAGCTGAGGCCCACCTTTACACTATTATAAAGGTGGCGCGTGATGAGGATCTTGTAGAGCAGATTGGAAAGGATATATATTTTGATCTTGTAGACCATGACAAAGTGAGGAGTTTCCGTGTCCAAAAACAGATGTCTCTTAACCTTTTCAAGGAAGAGGTTGCAAAAGAGTTTGGTGTACCAGTTCAATTCCAGCGCTATTGGCTATGGGCAAAGCGTCAGAACCATACCTATCGGCCTAATCGGCCGTTGATGCATGTTGAGGAAGCACAATCTGTTGGTCAATTGAGAGAGGTATCAAATAAGGTTCACAATGCAGAACTGAAGTTGTTTTTGGAAGTGGAACTTGGACTGGATTTACGTCCCATTGCACCACCGGAGAAGACAAAGGATGATATATTACTTTTCATCAAGTTATATGATCCTGAGAAAGAGGAGCTACGTTATGTCGGTAGGCGGTTTGTGAAAAGTACTGGCAAGCCATCAGAAATCATAAAGATGTTAAATGAAATGGCTGGTTATGATCCTGATGAAGAGATTGGACTTTACGAGGAAATTAAGTTTGAACCAAATGTCATGTGCGAACCTATTGACAAGAAATTAACTTTTCGAGCTAGCCAGTTAGAAGATGGAGATATTATATGCTTTCAGAAAGCTCCTGCCATTGACAGTGAGGAGCATGTTCGCTATCCTGATGTGCCTTCATACTTGGAATATGTGCATAATCGCCAGGTTGTTCACTTTCGTTCTCTGGATAAACCTAAGGAAGATGATTTCTGCCTGGAGATGTCAAGGCTCTATACATATGATGATGTGGTTGAGAGAGTAGCTCAACAACTTGGTTTGGATGATCCTTCAAAACTTAGGCTTACCCCACACAATTGCTACTCTCAACAACCAAAACCCCAACCTATTAAGTACCGTGGGGTGGACCATTTGTCTGATATGCTGGTTCACTACAACCAGACTTCGGATATATTATACTATGAAGTACTTGACATCCCTCTGCCAGAATTACAAGGTTTGAAAACACTGAAAGTGGCATTTCACCATGCTACCAAGGATGAAGTGGTTATTCATACCATCAGACTCCCAAAACAGAGCACTGTGGGGGATGTCCTTGATGATCTTAAAACAAAGGTAGAGATGTCTCATCCTGATGCTGAGCTTAGGTTGCTTGAAGTCTTCTATCATAAGATATACAAGGTCTTTCCTCCTACTGAAAAGATTGAAAGCATCAACGATCAATATTGGACTTTACGTGCGGAGGAGATTCCTGACGAAGAGAAAAATCTTGGTCCTCACAATCGTCTTATCCATGTATATCATTTTACTAAAGACACAGCTCAGAACCAAATGCAAATTCAGAACTTTGGGGAACCTTTTTTCTTGGTCATACATGAAGGTGAAACATTGGATGAAATTAAAGTGCGGATACAGAAGAAACTTCAAGTTCCTGATGATGAGTTTGCTAAGTGGAAGTTTGCTTTTTTCTCATTAGGACGTCCTGAGTACCTTCAGGACTCTGACATTGTATCCAGCCGTTTTCAGAGAAGAGATGTTTACGGTGCTTGGGAGCAGTATCTTGGCTTGGAGCACATAGACAATGCTCCTAAAAGATCATATGCCGCTAACCAGAACCGCCACACATTTGAGAAGCCAGTAAAGATTTATAATTAG 3354 0.4082 MTIMTPAPIDQQEDEEMLVPHTDLAENNHQPMEVVAQPETANNTVESQPVEDPPSSRFTWRIDNFSRMNTKKLYSEVFVVGGYKWRVLIFPKGNNVDYLSMYLDVADSTSLPYGWSRYAQFSLAIVNQIQNKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLVNDTLIVEAEVLVRKIVDYWTYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYQAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMINDRYEFPLQLDLDRENGKYLSPDADRTVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSEQWYKFDDERVTKEDIKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYVRETDKDKIICNVDEKDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDLVEQIGKDIYFDLVDHDKVRSFRVQKQMSLNLFKEEVAKEFGVPVQFQRYWLWAKRQNHTYRPNRPLMHVEEAQSVGQLREVSNKVHNAELKLFLEVELGLDLRPIAPPEKTKDDILLFIKLYDPEKEELRYVGRRFVKSTGKPSEIIKMLNEMAGYDPDEEIGLYEEIKFEPNVMCEPIDKKLTFRASQLEDGDIICFQKAPAIDSEEHVRYPDVPSYLEYVHNRQVVHFRSLDKPKEDDFCLEMSRLYTYDDVVERVAQQLGLDDPSKLRLTPHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVIHTIRLPKQSTVGDVLDDLKTKVEMSHPDAELRLLEVFYHKIYKVFPPTEKIESINDQYWTLRAEEIPDEEKNLGPHNRLIHVYHFTKDTAQNQMQIQNFGEPFFLVIHEGETLDEIKVRIQKKLQVPDDEFAKWKFAFFSLGRPEYLQDSDIVSSRFQRRDVYGAWEQYLGLEHIDNAPKRSYAANQNRHTFEKPVKIYN 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1444 1117 Pfam Ubiquitin carboxyl-terminal hydrolase 200 519 IPR001394 GO:0004843|GO:0016579
Lal18g1444 1117 Pfam Ubiquitin-specific protease C-terminal 885 1095 IPR029346 -
Lal18g1444 1117 SUPERFAMILY TRAF domain-like 53 186 - -
Lal18g1444 1117 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 438 455 IPR018200 GO:0004843|GO:0006511
Lal18g1444 1117 SMART math_3 57 161 IPR002083 GO:0005515
Lal18g1444 1117 CDD MATH 57 180 IPR002083 GO:0005515
Lal18g1444 1117 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 200 522 IPR028889 -
Lal18g1444 1117 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 623 875 IPR024729 -
Lal18g1444 1117 Coils Coil 531 562 - -
Lal18g1444 1117 Gene3D Cysteine proteinases 197 523 - -
Lal18g1444 1117 Gene3D - 801 898 - -
Lal18g1444 1117 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 201 216 IPR018200 GO:0004843|GO:0006511
Lal18g1444 1117 Gene3D - 683 800 - -
Lal18g1444 1117 SUPERFAMILY Cysteine proteinases 195 550 IPR038765 -
Lal18g1444 1117 CDD peptidase_C19C 198 524 - -
Lal18g1444 1117 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 1042 - -
Lal18g1444 1117 Pfam MATH domain 62 181 IPR002083 GO:0005515
Lal18g1444 1117 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE-LIKE PROTEIN 4 1042 - -
Lal18g1444 1117 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 54 196 IPR008974 GO:0005515
Lal18g1444 1117 ProSiteProfiles MATH/TRAF domain profile. 55 180 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1444 Lal-Chr18 16489215 16503167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1444 184 569 Miscellaneous Gene Families AT4G31670 23.614 6.47e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1444 K11838 - gmx:100800328 2130.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1444 18 16489215 16503167 Lal18g1444 18 16489215 16503167 ECH
Lal20g0218 20 1529160 1531923 Lal18g1444 18 16489215 16503167 ECH
Lal1g1714 1 19575554 19577523 Lal18g1444 18 16489215 16503167 ECH
Lal13g1254 13 10995701 10999405 Lal18g1444 18 16489215 16503167 ECH
Lal18g1444 18 16489215 16503167 Lal22g0174 22 1076340 1089130 LSH
Lal18g1444 18 16489215 16503167 Lal6g0181 6 1248885 1263611 LSH