Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0181 ATGACTCTCATGACCCCAGCTCCCATTGACCAGCAGGAGGACGAGGAGATGCTCGTCCCGAATACGAATTTGACTGAGAATAATCACCAACCCATGGAAGTTGTGGCTCAACCTGAAACTGCCAACAACACTGTGGAGAGCCAGCCTGTTGAGGATCCTCCATCATCGAGATTCACATGGAGAATTGACAATTTTTCTAGGATGAATACAAAAAAGCTATATTCAGAAGTATTCGTTGTTGGTGGTTACAAATGGCGTGTACTTATTTTCCCAAAAGGGAACAATGTGGACTATTTATCCATGTATTTGGATGTTGCAGACTCAACTAGTTTGCCCTACGGTTGGAGTAGATATGCACAGTTTAGCTTGGCAGTGGTTAATCAAATCCAGAATAAGTACACTGTGAGAAAAGACACTCAGCATCAATTCAATGCACGAGAAAGTGATTGGGGTTTCACGTCCTTCATGCCACTCGGTGAATTATATGATCCTTCTAGAGGGTATCTTTTGAATGATACTCTTATAGTTGAAGCCGAGGTTCTTGTTCGTAGGATTGTTGATTACTGGAGTTATGATTCAAAGAAGGAGACTGGCTATGTTGGCCTTAAGAACCAGGGAGCTACCTGTTATATGAATTCTTTACTCCAAACTTTGTACCATATTCCTTATTTCCGAAAGGCTGTGTACCACATGCCAACTACAGAGAATGATATGCCCTCCGGAAGCATCCCTTTGGCTCTTCAAAGTTTATTCTACAAGCTCCAGTATAGTGATACCAGTGTTGCAACAAAGGAGCTGACAAAGTCTTTTGGATGGGATACATATGATTCTTTCATGCAGCATGACGTTCAAGAACTAAATAGAGTCCTCTGTGAAAAACTTGAAGATAAAATGAAGGGAACCGTTGTTGAGGGAACTATACAGAAGTTATTTGAAGGGCACCATATGAACTATATTGAGTGCATCAATGTGGACTACAAATCAACTAGGAAGGAGTCATTTTATGACCTCCAGCTTGATGTCAAAGGCTGTCGTGATGTTTATGCTTCATTTGACAAGTATGTCGAAGTTGAACGTCTTGAGGGGGACAACAAATATCATGCTGAACAATATGGCCTGCAGTTATTTGATATTCACAGCTATGTAGAGTATGCAGTCATCTGTGGTACTCGCTATACAGATGCTAAGAAGGGGGTCCTATTCATTGATTTTCCACCTGTCCTGCAGCTTCAGCTGAAAAGATTTGAATATGACTTTATGCGGGATACTATGGTAAAGATTAATGACCGTTATGAGTTTCCCTTGCAACTTGACCTTGATCGCGAGAATGGAAAATATTTATCACCTGATGCTGACAGGACTGTCCGCAATCTTTACACACTTCACAGTGTTTTGGTTCACAGTGGTGGTGTGCATGGTGGACATTATTATGCTTTTATAAGGCCAACTCTCTCTGAGCAGTGGTACAAATTTGATGACGAGAGGGTGACAAAAGAAGACATTAAACGGGCATTAGAAGAGCAATACGGTGGCGAGGAGGAGTTGCCACAGACAAATCCTGGATTCAATAACACTCCTTTTAAATTCACCAAATATTCAAATGCTTATATGCTGGTGTATATTCGTGAAACTGACAAGGACAAAATAATATGCAACGTGGATGAGAAAGACATTGCTGAACATTTAAGGGAGAGGTTGAAGAAAGAGCAGGAAGAGAAAGAGCACAAAAAGAAAGAGAAGGCAGAGGCTCACCTTTACACTATTATAAAGGTGGCGCGTGATGAGGACCTTGTAGAGCAGATTGGAAAGGATATATATTTTGATCTCGTAGACCACGACAAAGTGAGGAGTTTTCGTGTCCAAAAACAGATGTCTTTTAACCTTTTCAAGGAAGAGGTTGCAAAAGAATTTGGTGTACCAGTCCAATTCCAGCGCTATTGGCTATGGGCAAAGCGTCAGAACCATACTTTTCGTCCTAATCGACCATTGACACATGTTGAGGAAGCACAATCTGTTGGTCAATTGAGAGAGGTATCAAACAAGGTCAACAACGCAGAACTAAAGTTGTTTTTGGAAGTGGAGCGCGGACTGGATTTACGTCCCATTGCACCACCTGAGAAGACAAAGGATGATATATTACTTTTCTTCAAGTTATATGAACCAGAAAAAGAGGAGCTACGATATGTAGGTAGACGGTTTTTGAAGAGTACTGGTAAGCCATCAGAAATCTTAACGATGTTAAATAAAATGGCTGGTTATGATCCTGACGAAGAGATTGGACTTTACGAGGTTGGTAAAGCAGTTATGCATTCAAGCAATATGCTTCTTTACCTGCTAAGTGTTGGTCAAGCAGTTATGCATTCATTTGTTTATGAATTGACTGAGCCTAGTGCTGTGCAGGAAATTAAGTTTGAACCAAATGTCATGTGTGAACCTATTGATAAGAAGTTAACTTTTCGAGCTAGCCAGTTAGAAGATGGAGATATTGTATGCTTTCAGAGAGCTCCTGCCATGGATAGTGAGGAGCATTTCCGCTATCCTGATGTACCTTCATACTTGGAATATGTGCACAATCGCCAGGTTGTTCACTTTCGTTCTCTGGATAAACCTAAGGAAGATGATTTCTGCCTGGAGATGTCAAGGCTCTATACATATGATGATGTTGTTGAGAGAGTAGCTCAACAACTTGGTTTGGACGATCCTTCAAAAATTAGGCTTACCCCACACAATTGCTACTCTCAACAACCAAAGCCCCAACCTATTAAGTACCGTGGGGTGGACCATTTGTCTGATATGCTGGTTCACTACAACCAGACTTCGGATATATTATACTATGAAGTACTTGACATCTCTCTGCCAGAATTACAAGGTTTGAAAACACTTAAAGTGGCATTTCACCATGCTACCAAAGATGAAGTGGTTATTCATACCATCAGACTCCCAAAACAGAGCAGTGTGGGGGATGTTCTTGATGATCTCAAAACAAAGGTGGAGATGTCTCATCCTGATGCTGAGCTTAGGTTGCTTGAAGTCTTCTATCATAAGATATACAAGGTCTTCCCTCCCACTGAAAAGATTGAAAGCATCAATGATCAATATTGGACATTACGTGCAGAGGAGATTCCTGATGAGGAGAAAAATCTTGGTCCTCATGATCGTCTTATCCATGTATATCATTTTACTAAAGACACAGCTCAGAACCAAATGCAAATTCAGAACTTTGGGGAACCTTTTTTCTTGGTCATACATGAAGGTGAAACATTGGATGAAATTAAACTGCGAATACAGAAGAAACTTCAAGTTCCCGATGATGAGTTTGCTAAGTGGAAGTTTGCTTTTTTCTCATTAGGACGTCCTGAGTACCTTCAGGACTCTGACATTGTATCCAGTCGTTTTCAGAGAAGAGATATTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAGCACATTGATAACGCTCCTAAAAGAGCATATGCCGTTAACCAGAACCGCCACACATTTGAGAAGCCAGTGAAGATTTATAATTAG 3528 0.4087 MTLMTPAPIDQQEDEEMLVPNTNLTENNHQPMEVVAQPETANNTVESQPVEDPPSSRFTWRIDNFSRMNTKKLYSEVFVVGGYKWRVLIFPKGNNVDYLSMYLDVADSTSLPYGWSRYAQFSLAVVNQIQNKYTVRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLLNDTLIVEAEVLVRRIVDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYGLQLFDIHSYVEYAVICGTRYTDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDADRTVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSEQWYKFDDERVTKEDIKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRETDKDKIICNVDEKDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDLVEQIGKDIYFDLVDHDKVRSFRVQKQMSFNLFKEEVAKEFGVPVQFQRYWLWAKRQNHTFRPNRPLTHVEEAQSVGQLREVSNKVNNAELKLFLEVERGLDLRPIAPPEKTKDDILLFFKLYEPEKEELRYVGRRFLKSTGKPSEILTMLNKMAGYDPDEEIGLYEVGKAVMHSSNMLLYLLSVGQAVMHSFVYELTEPSAVQEIKFEPNVMCEPIDKKLTFRASQLEDGDIVCFQRAPAMDSEEHFRYPDVPSYLEYVHNRQVVHFRSLDKPKEDDFCLEMSRLYTYDDVVERVAQQLGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDISLPELQGLKTLKVAFHHATKDEVVIHTIRLPKQSSVGDVLDDLKTKVEMSHPDAELRLLEVFYHKIYKVFPPTEKIESINDQYWTLRAEEIPDEEKNLGPHDRLIHVYHFTKDTAQNQMQIQNFGEPFFLVIHEGETLDEIKLRIQKKLQVPDDEFAKWKFAFFSLGRPEYLQDSDIVSSRFQRRDIYGAWEQYLGLEHIDNAPKRAYAVNQNRHTFEKPVKIYN 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0181 1175 CDD peptidase_C19C 198 545 - -
Lal6g0181 1175 SUPERFAMILY Cysteine proteinases 195 571 IPR038765 -
Lal6g0181 1175 Pfam Ubiquitin carboxyl-terminal hydrolase 200 540 IPR001394 GO:0004843|GO:0016579
Lal6g0181 1175 SUPERFAMILY TRAF domain-like 53 186 - -
Lal6g0181 1175 Gene3D - 859 956 - -
Lal6g0181 1175 CDD MATH 57 180 IPR002083 GO:0005515
Lal6g0181 1175 Pfam MATH domain 62 181 IPR002083 GO:0005515
Lal6g0181 1175 Gene3D Cysteine proteinases 197 544 - -
Lal6g0181 1175 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 764 - -
Lal6g0181 1175 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 799 1100 - -
Lal6g0181 1175 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 54 196 IPR008974 GO:0005515
Lal6g0181 1175 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 201 216 IPR018200 GO:0004843|GO:0006511
Lal6g0181 1175 Coils Coil 552 583 - -
Lal6g0181 1175 ProSiteProfiles MATH/TRAF domain profile. 55 180 IPR002083 GO:0005515
Lal6g0181 1175 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE-LIKE PROTEIN 799 1100 - -
Lal6g0181 1175 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE-LIKE PROTEIN 4 764 - -
Lal6g0181 1175 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 459 476 IPR018200 GO:0004843|GO:0006511
Lal6g0181 1175 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 644 770 IPR024729 -
Lal6g0181 1175 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 800 933 IPR024729 -
Lal6g0181 1175 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 200 543 IPR028889 -
Lal6g0181 1175 Pfam Ubiquitin-specific protease C-terminal 943 1153 IPR029346 -
Lal6g0181 1175 SMART math_3 57 161 IPR002083 GO:0005515
Lal6g0181 1175 Gene3D - 704 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0181 Lal-Chr6 1248885 1263611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0181 200 508 Miscellaneous Gene Families AT2G24640 23.284 5.77e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0181 K11838 - gmx:100800328 2098.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0181 6 1248885 1263611 Lal6g0181 6 1248885 1263611 ECH
Lal20g0218 20 1529160 1531923 Lal6g0181 6 1248885 1263611 ECH
Lal1g1714 1 19575554 19577523 Lal6g0181 6 1248885 1263611 ECH
Lal13g1254 13 10995701 10999405 Lal6g0181 6 1248885 1263611 ECH
Lal18g1444 18 16489215 16503167 Lal6g0181 6 1248885 1263611 LSH
Lal22g0174 22 1076340 1089130 Lal6g0181 6 1248885 1263611 LSH